YRC Public Data Repository - Protein Structure Prediction

Protein:	snRNP69D-PA
Organism:	Drosophila melanogaster
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snRNP69D-PA.

Description	E-value	Query Range	Subject Range
gi\|46227255 - gi\|46227255\|gb\|EAK88205.1\| small nuclear ribonucleoprotein D1. SM domain containing protein [Cryptos... gi\|66357964 - gi\|66357964\|ref\|XP_626160.1\| small nuclear ribonucleoprotein D1. SM domain containing protein [Crypt...	119.0	[0..1]	[124..12]
gi\|54658569 - gi\|54658569\|gb\|EAL37203.1\| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis] gi\|67615310 - gi\|67615310\|ref\|XP_667428.1\| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis TU502]	119.0	[0..1]	[124..1]
gi\|71018117, gi\|... - gi\|71018117\|ref\|XP_759289.1\| hypothetical protein UM03142.1 [Ustilago maydis 521], ref\|XP_400757.1\| ...	116.0	[0..1]	[103..68]
gi\|42546775, gi\|... - gi\|46105460\|ref\|XP_380534.1\| hypothetical protein FG00358.1 [Gibberella zeae PH-1], gi\|42546775\|gb\|E...	115.0	[0..1]	[93..1]
gi\|50732862 - gi\|50732862\|ref\|XP_418799.1\| PREDICTED: similar to KIAA0851 protein [Gallus gallus]	115.0	[0..5]	[94..652]
gi\|88181855, gi\|... - gi\|88181855\|gb\|EAQ89323.1\| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51], gi\|1161...	114.0	[0..1]	[93..1]
gi\|49250837, gi\|... - gi\|52345462\|ref\|NP_001004780.1\| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Xenopus (Silur... gi\|148227202, gi... - gi\|76779906\|gb\|AAI06262.1\| MGC78968 protein [Xenopus laevis], gi\|49255946\|gb\|AAH71069.1\| MGC78968 pr...	114.0	[0..1]	[94..1]
gi\|17945870 - gi\|17945870\|gb\|AAL48981.1\| RE39488p [Drosophila melanogaster]	113.0	[0..1]	[94..1]
gi\|39945518, gi\|... - gi\|39945518\|ref\|XP_362296.1\| hypothetical protein MGG_04741 [Magnaporthe grisea 70-15], gb\|EAA50982....	113.0	[0..1]	[93..1]
gi\|113564620, gi... - gi\|115458898\|ref\|NP_001053049.1\| Os04g0470200 [Oryza sativa (japonica cultivar-group)], gi\|113564620...	112.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLVRFLMKL SHETVTIELK NGTQIHGTIT GVDVAMNTHL KSVRMTIKNR DPVHLETLSI  60
   61 RGNNIRYFIL PDSLPLETLL IDDTPKSKTK KKDSGRVGNR GRGRGARGRG GPRGRGRGRA 120
  121 SGRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1b34A
Description:	D1 core SNRNP protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits