YRC Public Data Repository - Protein Structure Prediction

Protein:	Pbprp1-PA
Organism:	Drosophila melanogaster
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pbprp1-PA.

Description	E-value	Query Range	Subject Range
gi\|454396 - gi\|454396\|gb\|AAC46474.1\| PBPRP-1	139.0	[0..1]	[148..1]
gi\|27414033 - gi\|27414033\|gb\|AAO12083.1\| odorant-binding protein AgamOBP17 [Anopheles gambiae]	129.0	[0..1]	[141..1]
gi\|37778933 - gi\|37778933\|gb\|AAO74646.1\| odorant-binding protein 3-2 [Aedes aegypti]	129.0	[0..3]	[140..1]
gi\|55240329, gi\|... - gi\|58385779\|ref\|XP_314202.2\| ENSANGP00000014514 [Anopheles gambiae str. PEST], gi\|55240329\|gb\|EAA096...	128.0	[0..1]	[141..1]
gi\|167865986, gi... - gi\|19224143\|gb\|AAL86413.1\|AF468212_1 odorant-binding protein precursor [Culex pipiens quinquefasciat...	128.0	[0..4]	[140..12]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVARHFSFFL ALLILYDLIP SNQGVEINPT IIKQVRKLRM RCLNQTGASV DVIDKSVKNR  60
   61 ILPTDPEIKC FLYCMFDMFG LIDSQNIMHL EALLEVLPEE IHKTINGLVS SCGTQKGKDG 120
  121 CDTAYETVKC YIAVNGKFIW EEIIVLLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.221849
Match:	2erbA
Description:	AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits