YRC Public Data Repository - Protein Structure Prediction

Protein:	Tim13-PA
Organism:	Drosophila melanogaster
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tim13-PA.

Description	E-value	Query Range	Subject Range
gi\|49118898 - gi\|49118898\|gb\|AAH72975.1\| Timm13 protein [Xenopus laevis]	99.0	[0..2]	[84..22]
gi\|89272450, gi\|... - gi\|89272450\|emb\|CAJ82383.1\| translocase of inner mitochondrial membrane 13 homolog a (yeast) [Xenopu...	98.0	[0..2]	[84..14]
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	98.0	[0..1]	[86..118]
gi\|47225684 - gi\|47225684\|emb\|CAG08027.1\| unnamed protein product [Tetraodon nigroviridis]	97.0	[0..2]	[84..13]
tim13 - TIM22 inner membrane protein import complex subunit Tim13 TIM13_SCHPO - Mitochondrial import inner membrane translocase subunit tim13 OS=Schizosaccharomyces pombe (strain 9...	97.0	[0..2]	[85..11]
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	96.0	[0..4]	[79..170]
gi\|76660354 - gi\|76660354\|ref\|XP_600831.2\| PREDICTED: similar to translocase of inner mitochondrial membrane 8 hom...	93.0	[0..3]	[88..12]
AGAP002277-PA - mitochondrial import inner membrane translocase subunit Tim13\|protein_coding\|2R:18513486:18513922:1\|... gi\|55246223, gi\|... - gi\|58376102\|ref\|XP_307903.2\| AGAP002277-PA [Anopheles gambiae str. PEST], gi\|55246223\|gb\|EAA03740.2\|...	92.0	[0..4]	[83..9]

Back

Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAANMEKGE LMNQVKQQIA LANAQEMLSK MTEKCFKKCI QKPGKSLDST EQRCISQCMD  60
   61 RFMDAWNLVS RTYGNRLQRE QYRTMESLEM TS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits