YRC Public Data Repository - Protein Structure Prediction

Protein:	chrb-PC, FBpp0304225
Organism:	Drosophila melanogaster
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for chrb-PC, FBpp0304225.

Description	E-value	Query Range	Subject Range
gi\|7328579 - gi\|7328579\|gb\|AAF59840.1\|AF221109_1 CHARYBDE [Drosophila melanogaster]	509.0	[0..1]	[299..1]
gi\|54640900, gi\|... - gi\|54640900\|gb\|EAL29651.1\| GA20420 [Drosophila pseudoobscura pseudoobscura], gi\|125979765\|ref\|XP_001... CHRB_DROPS - Protein charybde OS=Drosophila pseudoobscura pseudoobscura GN=chrb PE=2 SV=1 gi\|195166389, gi... - gi\|195166389\|ref\|XP_002024017.1\| GL22796 [Drosophila persimilis], gi\|194107372\|gb\|EDW29415.1\| GL2279...	372.0	[0..1]	[299..1]
DDT4L_MOUSE - DNA damage-inducible transcript 4-like protein OS=Mus musculus GN=Ddit4l PE=2 SV=1	226.0	[0..120]	[297..5]
DDT4L_RAT - DNA damage-inducible transcript 4-like protein OS=Rattus norvegicus GN=Ddit4l PE=2 SV=1	224.0	[0..120]	[297..5]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMEVLSVQN HIQGKFGVNK IKDWQASTAP LEEEEELTAG VNGNTAAGEG ILDVDVVDGH  60
   61 PASVLHMRQH QALNTRPSAT PPSAGGGGPL AGGGSVGMTT PKQATSPVAA ASFEAPLSGG 120
  121 SAAAYHHAYM TNVLSSTAQQ HHPLP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [146-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASPLQSTACA RFGAADNLDD VSASAVRELS QQLQAQLRDA KRRHLACTEV TLPNDLTQRI  60
   61 AAEIIRMSER EPCGERACTL FIEFESEPNK VKRIAYFKVD PDTVSIFELY LTLRQDKSGW 120
  121 SSLVPQFIKN LTRSNTINIS PDFTLTKKKL YSSE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	72.229148
Match:	PF07809.2
Description:	No description for PF07809.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits