YRC Public Data Repository - Protein Structure Prediction

Protein:	scyl-PA, FBpp0308940
Organism:	Drosophila melanogaster
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scyl-PA, FBpp0308940.

Description	E-value	Query Range	Subject Range
gi\|7328581 - gi\|7328581\|gb\|AAF59841.1\|AF221110_1 SCYLLA [Drosophila melanogaster]	415.0	[0..1]	[280..1]
gi\|109089524 - gi\|109089524\|ref\|XP_001105457.1\| PREDICTED: similar to RTP801 [Macaca mulatta]	278.0	[0..65]	[256..450]
gi\|73952868 - gi\|73952868\|ref\|XP_546156.2\| PREDICTED: similar to RTP801 isoform 1 [Canis familiaris]	268.0	[0..62]	[256..18]
gi\|114631154 - gi\|114631154\|ref\|XP_507843.2\| PREDICTED: similar to DNA-damage-inducible transcript 4 [Pan troglodyt...	267.0	[0..74]	[256..298]
DDIT4_MOUSE - DNA damage-inducible transcript 4 protein OS=Mus musculus GN=Ddit4 PE=1 SV=1 IPI:IPI00328567.... - Hypothetical protein gi\|149038775 - gi\|149038775\|gb\|EDL93064.1\| DNA-damage-inducible transcript 4 [Rattus norvegicus]	265.0	[0..64]	[256..19]
DDIT4_RAT - DNA damage-inducible transcript 4 protein OS=Rattus norvegicus GN=Ddit4 PE=1 SV=1	264.0	[0..64]	[256..19]
DDIT4_BOVIN - DNA damage-inducible transcript 4 protein OS=Bos taurus GN=DDIT4 PE=2 SV=1	263.0	[0..64]	[256..19]
DDIT4_XENTR - DNA damage-inducible transcript 4 protein OS=Xenopus tropicalis GN=ddit4 PE=2 SV=1	260.0	[0..56]	[256..7]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMDVIAREQ IIYGSLQGSN KNKDWTSRLP PPSAYTLDLM SKKAKTTTGG SSNGSNATAT  60
   61 STTTSTSSSI KHKQPAGSSN NNVGQSQSKK TKPSGSYNSN SNYYYYAADE EEGGSADY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [119-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALSNYDKKAV EELSLRLLDE LRAAKSRHLT CTEVSLPCDL TPSVAREIIR VSEKEPRGIR  60
   61 GCTIYIEFED EPKNSRRIAS IKVDSDTVST FEVYLTLRQD HRGWTSLLPQ FMKSLARTIT 120
  121 ISPEYTITKN KLYSADGLGA RRSYSFGSHA HRPSAAIATP TN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.920819
Match:	PF07809.2
Description:	No description for PF07809.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits