YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL2-PA
Organism:	Drosophila melanogaster
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL2-PA.

Description	E-value	Query Range	Subject Range
RL2_PELTS - 50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=r...	345.0	[0..33]	[290..1]
RL2_THEP3 - 50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE... gi\|242230648, gi... - gi\|242257804\|ref\|ZP_04802654.1\| ribosomal protein L2 [Thermoanaerobacter sp. X513], gi\|242230648\|gb\|... RL2_THEPX - 50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1 gi\|241904338, gi... - gi\|241904338\|ref\|ZP_04789040.1\| ribosomal protein L2 [Thermoanaerobacter brockii subsp. finnii Ako-1...	345.0	[0..33]	[289..1]
RL2_CARHZ - 50S ribosomal protein L2 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-29...	344.0	[0..33]	[289..1]
RL2_MOOTA - 50S ribosomal protein L2 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplB PE=3 SV=1	342.0	[0..33]	[294..1]
gi\|196196716, gi... - gi\|196253846\|ref\|ZP_03152451.1\| ribosomal protein L2 [Clostridium thermocellum DSM 4150], gi\|1961967... RL2_CLOTH - 50S ribosomal protein L2 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / N...	340.0	[0..33]	[289..1]
RL2_GEOKA - 50S ribosomal protein L2 OS=Geobacillus kaustophilus (strain HTA426) GN=rplB PE=3 SV=1 gi\|221089325, gi... - gi\|221089325\|ref\|ZP_03558845.1\| ribosomal protein L2 [Geobacillus sp. Y412MC61], gi\|220706751\|gb\|EED... RL2_GEOKA - 50S ribosomal protein L2 OS=Geobacillus kaustophilus GN=rplB PE=3 SV=1 gi\|229499934, gi... - gi\|229499934\|ref\|ZP_04393611.1\| ribosomal protein L2 [Geobacillus sp. Y412MC52], gi\|229329213\|gb\|EEN...	340.0	[0..33]	[291..1]
RL2_BACHD - 50S ribosomal protein L2 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... RL2_BACHD - 50S ribosomal protein L2 OS=Bacillus halodurans GN=rplB PE=3 SV=1	339.0	[0..33]	[289..1]
RL2_GEOSE - 50S ribosomal protein L2 OS=Geobacillus stearothermophilus GN=rplB PE=1 SV=2	339.0	[0..33]	[291..1]
RL2_BACSK - 50S ribosomal protein L2 OS=Bacillus clausii (strain KSM-K16) GN=rplB PE=3 SV=1	337.0	[0..33]	[289..1]
gi\|89100346, gi\|... - gi\|89100346\|ref\|ZP_01173211.1\| 50S ribosomal protein L2 [Bacillus sp. NRRL B-14911], gi\|89084967\|gb\|...	337.0	[0..33]	[291..1]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSVTRLLST TLTIQTPFRT APAFLQQLRG KTKVVEKPKP GAGQQFRRTV HFPEKYTVEP  60
   61 LKITHLAGRD PVSGRLVAKG IGGGIKQQYR WVKWVRDGPT EGAQEELVLE VLRDGCRTAK 120
  121 VALVAVGDEL KYILATENMK AGDILKTSRF IPRIPVRPNE GDAYPLGALP VGTRIHCLEK 180
  181 NPGQMCHLIH AAGTFGTILR KFDEKVVVQL PSKREFAFQR TCMATVGRLS NPEHNKEHVG 240
  241 SAQRMREMGN RPRSGLWKRK EGKHGRKIRR LPPMTTISPP APPKEEAIKL TLPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.30103
Match:	1vsaB
Description:	No description for 1vsaB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits