YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr67Fb-PA
Organism:	Drosophila melanogaster
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr67Fb-PA.

Description	E-value	Query Range	Subject Range
gi\|108875723, gi... - gi\|157118418\|ref\|XP_001659105.1\| Pupal cuticle protein, putative [Aedes aegypti], gi\|108875723\|gb\|EA...	149.0	[0..1]	[117..1]
gi\|68051541 - gi\|68051541\|gb\|AAY85034.1\| IP05675p [Drosophila melanogaster]	146.0	[0..1]	[122..7]
gi\|194108650, gi... - gi\|195176010\|ref\|XP_002028666.1\| GL11748 [Drosophila persimilis], gi\|194108650\|gb\|EDW30693.1\| GL1174... gi\|125979215, gi... - gi\|54642405\|gb\|EAL31154.1\| GA14899 [Drosophila pseudoobscura pseudoobscura], gi\|125979215\|ref\|XP_001... gi\|125979215\|ref... - GA14899-PA [Drosophila pseudoobscura], GA14899 [Drosophila pseudoobscura pseudoobscura]	144.0	[0..1]	[121..1]
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	133.0	[0..23]	[116..78]
AGAP005453-PA, A... - CPR12: cuticular protein RR-1 family (CPR12)\|protein_coding\|2L:15724263:15724703:-1\|gene:AGAP005453,... gi\|31213025, gi\|... - gi\|31213027\|ref\|XP_315457.1\| cuticular protein 13, RR-1 family (AGAP005454-PA) [Anopheles gambiae st...	132.0	[0..13]	[120..23]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKTALIISL FLVAAIRAAD ESQAETTKYR NEIKPDGSYS WEYGTSNGID AQESGVGGVQ  60
   61 AAGSVSYAAP DGTPIQLEYT ADENGYRPTG AHLPTPPPIP DYILKALAYI EAHPFQRIQL 120
  121 KK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.69897
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.722	N/A	N/A	b.1.18	E set domains
View	Download	0.666	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.584	N/A	N/A	d.105.1	Clathrin adaptor appendage, alpha and beta chain-specific domain
View	Download	0.579	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.571	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits