YRC Public Data Repository - Protein Structure Prediction

Protein:	CG14164-PB, CG14...
Organism:	Drosophila melanogaster
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG14164-PB, CG14....

Description	E-value	Query Range	Subject Range
LS12A_DANRE - Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1	208.0	[0..8]	[182..10]
LSM12_CHICK - Protein LSM12 homolog OS=Gallus gallus GN=LSM12 PE=2 SV=1	204.0	[0..1]	[182..1]
gi\|27882563 - gi\|27882563\|gb\|AAH44587.1\| LSM12 homolog (S. cerevisiae) [Homo sapiens]	202.0	[0..8]	[182..9]
gi\|114666892 - gi\|114666892\|ref\|XP_523664.2\| PREDICTED: similar to LSM12 homolog [Pan troglodytes]	201.0	[0..8]	[182..62]
gi\|66771387 - gi\|66771387\|gb\|AAY55005.1\| IP06775p [Drosophila melanogaster]	201.0	[0..24]	[186..1]
LSM12_XENLA - Protein LSM12 homolog OS=Xenopus laevis GN=lsm12 PE=2 SV=1	201.0	[0..8]	[182..8]
gi\|47220647 - gi\|47220647\|emb\|CAG06569.1\| unnamed protein product [Tetraodon nigroviridis]	198.0	[0..8]	[182..10]
gi\|79351187, gi\|... - gi\|79351187\|ref\|NP_173816.2\| unknown protein [Arabidopsis thaliana], gi\|22137114\|gb\|AAM91402.1\| At1g...	195.0	[0..6]	[184..17]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLAPCFTV GSIVRCKTCF GDNISGEVVA FDLGVKMLIM KCPSSNGGGD EQTTCNVTIV  60
   61 NLSLCMDIEI VKEAIPPAEV QQPEPIDLPM IRERYRYATE HRTLSCRSYH PNASPFGQAL 120
  121 FRLLVKRFGD PAIIWQNKGD QVAINILRQV VIDAPYATEN IRYLDWNPKL AICVQEVVQN 180
  181 FCSKQF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.15
Match:	1m5qA
Description:	Sm-Like archaeal protein Smap3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits