YRC Public Data Repository - Protein Structure Prediction

Protein:	CG16719-PA
Organism:	Drosophila melanogaster
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG16719-PA.

Description	E-value	Query Range	Subject Range
ctg02_58\|12046\|S... - protein gi\|29245143, gi\|... - gi\|71068654\|ref\|XP_766947.1\| hypothetical protein GLP_563_8260_7526 [Giardia lamblia ATCC 50803], gi... GL50803_12046 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=SPEF1-like protein \| location=GLCHR03:1664834-1...	262.0	[0..1]	[238..6]
gi\|220952302 - gi\|220952302\|gb\|ACL88694.1\| CG12395-PA [synthetic construct] CG12395-PA - This gene is referred to in FlyBase by the symbol Dmel\CG12395 (CG12395, FBgn0030722). It is a prote...	251.0	[0..1]	[233..9]
SPEF1_MOUSE - Sperm flagellar protein 1 OS=Mus musculus GN=Spef1 PE=2 SV=1	247.0	[0..1]	[237..5]
gi\|73991903 - gi\|73991903\|ref\|XP_542915.2\| PREDICTED: similar to Protein C20orf28 homolog [Canis familiaris]	239.0	[0..1]	[237..5]
SPEF1_BOVIN - Sperm flagellar protein 1 OS=Bos taurus GN=SPEF1 PE=2 SV=1	230.0	[0..1]	[237..5]
SPEF1 - sperm flagellar 1	225.0	[0..1]	[237..5]
gi\|109092738 - gi\|109092738\|ref\|XP_001115387.1\| PREDICTED: similar to Sperm flagellar protein 1 [Macaca mulatta]	225.0	[0..1]	[237..5]
gi\|114680691 - gi\|114680691\|ref\|XP_001161874.1\| PREDICTED: hypothetical protein [Pan troglodytes]	225.0	[0..1]	[237..5]
gi\|68534597, gi\|... - gi\|84781654\|ref\|NP_001034113.1\| hypothetical protein LOC311429 [Rattus norvegicus], gi\|68534597\|gb\|A...	202.0	[0..1]	[151..5]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENEQQNDLN QWLKEQRIIL DLKARRSFSD VLPVAKIVKR SHPRLVDLHN YTPKSSVALK  60
   61 LQSWQTFNQK VLKKLGINLT RSELEQLASA APGAIESLFH ELIAVTKCAS PRPRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	2ee7A
Description:	No description for 2ee7A was found.

Predicted Domain #2

Region A:
Residues: [116-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLSVSPTSSQ KSVVIKKLAN KNSVVRTLNR SLTQVIERSC SIDSQPQVLT MDVNVVVNGQ  60
   61 MKKVSKKVVE YEHYANAIRE SAEKSRYINS IAERANHLEN TIALKNERID VLLHQMAKLS 120
  121 VSILSMPHTL NGTDDDTELQ SRSDNAAEPC YEFGTF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits