YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL12-PA
Organism:	Drosophila melanogaster
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL12-PA.

Description	E-value	Query Range	Subject Range
gi\|71361655 - gi\|71361655\|ref\|NP_001025071.1\| mitochondrial ribosomal protein L12 [Rattus norvegicus]	167.0	[0..4]	[182..88]
gi\|54035364, gi\|... - gb\|AAH86163.1\| Unknown (protein for MGC:98601) [Xenopus laevis], gb\|AAH83969.1\| Unknown (protein fo... RM12_MOUSE - 39S ribosomal protein L12, mitochondrial OS=Mus musculus GN=Mrpl12 PE=1 SV=2	166.0	[0..4]	[182..13]
RM12_BOVIN - 39S ribosomal protein L12, mitochondrial OS=Bos taurus GN=MRPL12 PE=1 SV=1	163.0	[0..6]	[182..14]
gi\|109119096 - gi\|109119096\|ref\|XP_001111712.1\| PREDICTED: mitochondrial ribosomal protein L12 [Macaca mulatta]	161.0	[0..10]	[182..27]
gi\|114670948 - gi\|114670948\|ref\|XP_001163363.1\| PREDICTED: mitochondrial ribosomal protein L12 [Pan troglodytes] sp\|P52815\|RM12_H... - 39S ribosomal protein L12, mitochondrial OS=Homo sapiens GN=MRPL12 PE=1 SV=2 VAR_052001, 39S ribosom...	158.0	[0..10]	[182..27]
gi\|1313962 - gi\|1313962\|emb\|CAA56249.1\| mitochondrial ribosomal protein L7L12 [Homo sapiens]	157.0	[0..10]	[182..27]
gi\|73964761 - gi\|73964761\|ref\|XP_850016.1\| PREDICTED: similar to 39S ribosomal protein L12, mitochondrial precurso...	154.0	[0..6]	[182..14]
gi\|50416673, gi\|... - gi\|55742214\|ref\|NP_001006886.1\| mitochondrial ribosomal protein L12 [Xenopus (Silurana) tropicalis],... gi\|55742214 - ref\|NP_001006886.1\| mitochondrial ribosomal protein L12 [Xenopus tropicalis]	148.0	[0..6]	[182..9]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHITRLALRQ ISRQVQLHRM YSAAAPAAAV SGAEKLVPPA PEGAAKPPNP KLDSIVNNIA  60
   61 ALNLLEVAEL STLLKQKLNL PETAFAPQFA AGPARAAPAE DEEEAAPKKV QTSFKVKLVK 120
  121 FDEKQKVALI KEVKNLLEGM NLVQAKKFVE SAPTIVKEDI PKEEAEKLKE ALSKAGAIIE 180
  181 IE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	2ftcE
Description:	No description for 2ftcE was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits