YRC Public Data Repository - Protein Structure Prediction

Protein:	Cp18-PA
Organism:	Drosophila melanogaster
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cp18-PA.

Description	E-value	Query Range	Subject Range
CH18_DROVI - Chorion protein S18 OS=Drosophila virilis GN=Cp18 PE=3 SV=1	164.0	[0..1]	[172..1]
gi\|295768, gi\|85... - gi\|8524\|emb\|CAA29602.1\| chorion protein s18-1 [Drosophila melanogaster], gi\|295768\|emb\|CAA26328.1\| S...	161.0	[0..1]	[172..1]
gi\|2921863 - gi\|2921863\|gb\|AAC04874.1\| chorion protein S18 [Drosophila heteroneura]	158.0	[0..1]	[172..1]
CH18_DROGR - Chorion protein S18 OS=Drosophila grimshawi GN=Cp18 PE=3 SV=1	156.0	[0..1]	[172..1]
CH18_DROSU - Chorion protein S18 OS=Drosophila subobscura GN=Cp18 PE=3 SV=1	144.0	[0..1]	[172..1]
gi\|228032 - gi\|228032\|prf\|\|1715318A chorion protein s18	143.0	[0..6]	[172..1]
gi\|54641849\|gb\|E... - GA19656-PA [Drosophila pseudoobscura], GA19656 [Drosophila pseudoobscura pseudoobscura] gi\|194114433, gi... - gi\|195173508\|ref\|XP_002027532.1\| GL10335 [Drosophila persimilis], gi\|194114433\|gb\|EDW36476.1\| GL1033... gi\|125978130, gi... - gi\|54641849\|gb\|EAL30599.1\| GA19656 [Drosophila pseudoobscura pseudoobscura], gi\|125978130\|ref\|XP_001...	133.0	[0..1]	[172..1]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKFMCICLC AISAVSANSY GRSRGGYGGA PVGGYAYQVQ PALTVKAIVP SYGGGYGGNH  60
   61 GGYGGAYESV PVPVSSAYSG ANVGSQYSGS GYGGAPPVDA QAIALAKLAL AAPSAGAPLV 120
  121 WKEAPRYAQP VYPPTSYVNQ EYGHSEKVKG GSAAAAASSV AAGKKGYKRP SY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.200659
Match:	PF03964.6
Description:	No description for PF03964.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits