YRC Public Data Repository - Protein Structure Prediction

Protein:	mtrm-PA
Organism:	Drosophila melanogaster
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mtrm-PA.

Description	E-value	Query Range	Subject Range
gi\|415632 - gi\|415632\|gb\|AAA03463.1\| cloned by ability to arrest the cell cycle when expressed in the fission ye...	370.0	[0..1]	[217..1]
MTRM_DROYA - Protein matrimony OS=Drosophila yakuba GN=mtrm PE=2 SV=1	334.0	[0..1]	[217..1]
gi\|195171034, gi... - gi\|195171034\|ref\|XP_002026316.1\| GL24705 [Drosophila persimilis], gi\|194111211\|gb\|EDW33254.1\| GL2470... gi\|125980151, gi... - gi\|54641096\|gb\|EAL29847.1\| GA14984-PA [Drosophila pseudoobscura], gi\|125980151\|ref\|XP_001354108.1\| G...	208.0	[0..1]	[217..1]
gi\|91983342, gi\|... - gi\|91983346\|gb\|ABE68743.1\| CG18543 [Drosophila americana], gi\|91983344\|gb\|ABE68742.1\| CG18543 [Droso...	152.0	[0..1]	[207..1]

Back

Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSRTPTNK TKITLNRTPT LKERRWNTLK VNTSNVRCST PIFGNFRSPN LSPIENMGTK  60
   61 GKSPVSPMRF ATFKKVPTKV HPKQQQQQQH QHCHRTQLKP PPFVLPKPQE EIIEPEREIK 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSSPDTCSDD SNMETSLALE SRRRSIKASN HSYVVNHAAN VEQILMHMGL ENYVTNFEEA  60
   61 HIDLVELASL ERADLVKIGL NTDEDCNRIM DVLHTL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.19
Match:	2b6gA
Description:	RNA recognition by the Vts1 SAM domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits