YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr66Cb-PA
Organism:	Drosophila melanogaster
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr66Cb-PA.

Description	E-value	Query Range	Subject Range
gi\|112983758, gi... - gi\|12862591\|dbj\|BAB32481.1\| cuticle protein [Bombyx mori], gi\|112983758\|ref\|NP_001036866.1\| cuticle ...	138.0	[0..1]	[156..1]
gi\|66564779 - gi\|66564779\|ref\|XP_624729.1\| PREDICTED: similar to CG1259-PB [Apis mellifera]	127.0	[0..49]	[149..184]
gi\|91082113 - gi\|91082113\|ref\|XP_968054.1\| PREDICTED: similar to CG1919-PA [Tribolium castaneum]	124.0	[0..1]	[157..227]
gi\|125776262, gi... - gi\|54638964\|gb\|EAL28366.1\| GA12160-PA [Drosophila pseudoobscura], gi\|125776262\|ref\|XP_001359221.1\| G...	124.0	[0..1]	[157..1]
gi\|24660811, gi\|... - gi\|24660811\|ref\|NP_648208.1\| CG7072-PA [Drosophila melanogaster], gi\|23093945\|gb\|AAF50443.2\| CG7072-...	123.0	[0..2]	[150..40]
AGAP010124-PA - CPR98: cuticular protein RR-2 family (CPR98)\|protein_coding\|3R:49242965:49243654:1\|gene:AGAP010124 gi\|119114475, gi... - gi\|119114475\|ref\|XP_001238134.1\| cuticular protein 98, RR-2 family (AGAP010124-PA) [Anopheles gambia...	121.0	[0..1]	[159..1]
gi\|157109753, gi... - gi\|157109753\|ref\|XP_001650809.1\| cuticle protein, putative [Aedes aegypti], gi\|108868408\|gb\|EAT32633...	120.0	[0..1]	[150..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKYLIFAS ALCLSLAYPL EHQYYEESHG YEHLAHHEPE PIHEYGHHQI ERISLGEEHG  60
   61 HLEHAEPHYE THESHGHDEH VDYYAPPKYA FKYGVNDFHT GDVKSQHETR DGDTVKGQYS 120
  121 LVEPDGSIRT VDYTADKHNG FNAVVHKTAP VHHHEELHEH HY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.236572
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits