YRC Public Data Repository - Protein Structure Prediction

Protein:	Srp9-PA
Organism:	Drosophila melanogaster
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Srp9-PA.

Description	E-value	Query Range	Subject Range
gi\|157829621, gi... - gi\|5107800\|pdb\|1914\| Chain , Signal Recognition Particle Alu Rna Binding Heterodimer, Srp914, gi\|1...	134.0	[0..1]	[77..147]
gi\|73961487 - gi\|73961487\|ref\|XP_854739.1\| PREDICTED: similar to Signal recognition particle 9 kDa protein (SRP9) ... gi\|76637084 - gi\|76637084\|ref\|XP_605518.2\| PREDICTED: similar to Signal recognition particle 9 kDa protein (SRP9) ... tr\|M3WD00\|M3WD00... - Signal recognition particle 9 kDa protein OS=Felis catus GN=SRP9 PE=3 SV=1 gi\|149748671 - gi\|149748671\|ref\|XP_001488990.1\| PREDICTED: similar to HECT, C2 and WW domain containing E3 ubiquiti... ENSOCUP000000092... - pep:novel chromosome:oryCun2:16:47743197:47757822:1 gene:ENSOCUG00000010791 transcript:ENSOCUT000000...	126.0	[0..1]	[77..1]
gi\|114572895 - gi\|114572895\|ref\|XP_001137987.1\| PREDICTED: signal recognition particle 9kDa isoform 3 [Pan troglody... SRP9 - signal recognition particle 9kDa	126.0	[0..1]	[77..1]
gi\|109499186, gi... - gi\|186910265\|ref\|NP_001119567.1\| signal recognition particle 9 [Rattus norvegicus], gi\|149040908\|gb\|...	126.0	[0..1]	[77..1]
gi\|41055367, gi\|... - gi\|41055367\|ref\|NP_957390.1\| signal recognition particle 9 [Danio rerio], gi\|29436534\|gb\|AAH49522.1\|...	125.0	[0..1]	[77..1]
gi\|62857637, gi\|... - gi\|62857637\|ref\|NP_001016786.1\| signal recognition particle 9 [Xenopus (Silurana) tropicalis], gi\|13...	125.0	[0..1]	[77..1]
SRP09_MACFA - Signal recognition particle 9 kDa protein OS=Macaca fascicularis GN=SRP9 PE=3 SV=1	125.0	[0..1]	[77..1]
gi\|53136754, gi\|... - gi\|53136754\|emb\|CAG32706.1\| hypothetical protein [Gallus gallus], gi\|147903950\|ref\|NP_001091005.1\| s...	124.0	[0..1]	[77..1]

Back

Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFVKNWDDF EIAVENMYLA NPQNCRLTMK YAHSKGHILL KMTDNVKCVQ YKAENMPDLR  60
   61 KIEKITSNLV GHMASKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1914A
Description:	SIGNAL RECOGNITION PARTICLE ALU RNA BINDING HETERODIMER, SRP9/14
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits