YRC Public Data Repository - Protein Structure Prediction

Protein:	CG7548-PA
Organism:	Drosophila melanogaster
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7548-PA.

Description	E-value	Query Range	Subject Range
gi\|46228363 - gi\|46228363\|gb\|EAK89262.1\| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ... gi\|66359288 - gi\|66359288\|ref\|XP_626822.1\| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...	212.0	[0..4]	[183..1679]
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	211.0	[0..4]	[183..1672]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	197.0	[0..4]	[197..1503]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	190.0	[0..10]	[168..1369]
gi\|134089267, gi... - gi\|50257749\|gb\|EAL20450.1\| hypothetical protein CNBE3710 [Cryptococcus neoformans var. neoformans B-... gi\|58267574, gi\|... - gi\|58267574\|ref\|XP_570943.1\| DNA-directed RNA polymerase ii largest subunit [Cryptococcus neoformans...	185.0	[0..2]	[197..1556]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	182.0	[0..1]	[197..1487]
gi\|73955449 - gi\|73955449\|ref\|XP_858007.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	178.0	[0..70]	[196..1706]
gi\|68473217, gi\|... - gi\|68473217\|ref\|XP_719414.1\| hypothetical protein CaO19.7655 [Candida albicans SC5314], gi\|46441230\|... orf19.7655 - RPO21 CGDID:CAL0000919 Assembly 19, Contig19-2518 (190144, 195330) CDS, translated using codon table...	178.0	[0..10]	[182..1509]
gi\|68370130, gi\|... - gi\|68370178\|ref\|XP_709724.1\| PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (R...	175.0	[0..76]	[180..1743]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYFQFLSVA SSLLLLLAPT WAGLIAQPTI TYAGNEHAVA HTQQNVVRSF DGTVSHYAKS  60
   61 LATPYSQVHK QDTRISNNVY QPAVAKTFSY ATAPAPVYTH QAHQEPKNLF TQASPVYQQD 120
  121 AHVQTPSVYQ QAAHVQTPSV YHQPAQVQSY HQPGHVEAPS VYQQNAHYSH QPAVIHYSPA 180
  181 ETVSHMSFDG FGTHYGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.18
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits