YRC Public Data Repository - Protein Structure Prediction

Protein:	CG8543-PA
Organism:	Drosophila melanogaster
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8543-PA.

Description	E-value	Query Range	Subject Range
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	215.0	[0..27]	[210..1672]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	212.0	[0..15]	[217..1484]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	194.0	[0..2]	[213..1500]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	193.0	[0..91]	[217..1402]
gi\|111060144 - gi\|111060144\|gb\|EAT81264.1\| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]	172.0	[0..3]	[217..1046]
gi\|158332, gi\|279533 - pir\|\|RNFF2L DNA-directed RNA polymerase (EC 2.7.7.6) II 215K chain [validated] - fruit fly (Drosophi...	172.0	[0..5]	[213..1648]
gi\|40746483, gi\|... - gi\|67517057\|ref\|XP_658413.1\| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	168.0	[0..2]	[210..1504]
gi\|83767526, gi\|... - gi\|9955855\|dbj\|BAB12227.1\| RNA polymerase II largest subunit [Aspergillus oryzae], gi\|83767526\|dbj\|B... gi\|169770395 - gi\|169770395\|ref\|XP_001819667.1\| hypothetical protein [Aspergillus oryzae RIB40]	167.0	[0..3]	[210..1513]
gi\|4808166 - gi\|4808166\|emb\|CAB42797.1\| largest subunit of the RNA polymerase II complex [Drosophila pseudoobscur...	167.0	[0..5]	[213..1570]
gi\|68473217, gi\|... - gi\|68473217\|ref\|XP_719414.1\| hypothetical protein CaO19.7655 [Candida albicans SC5314], gi\|46441230\|... orf19.7655 - RPO21 CGDID:CAL0000919 Assembly 19, Contig19-2518 (190144, 195330) CDS, translated using codon table...	167.0	[0..17]	[208..1509]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKYVLLSF CALVGVASAG FLAPATTYAA ASIPVVAKVA QPHYDAVGTT QQNVVRSFGG  60
   61 TVSTYSKNVV TPYSSVSKVD SRITNNVYTP KTLYSAPAPV ITKSFYAAAP APVVAKTVYS 120
  121 APVAKAVYAA PAPVYAAPAP VVAKTVYSAP VAKAVYAAPA PVYSAPAPVV AKTVYSAPAP 180
  181 VYHAPAPLVA AAPAAYVKYS PAAVVAHASF DGFGSHWGY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.15
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits