YRC Public Data Repository - Protein Structure Prediction

Protein:	akirin-PE, akiri...
Organism:	Drosophila melanogaster
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for akirin-PE, akiri....

Description	E-value	Query Range	Subject Range
gi\|125978397\|ref... - GA21176-PA [Drosophila pseudoobscura], GA21176 [Drosophila pseudoobscura pseudoobscura] gi\|54641985, gi\|... - gi\|54641985\|gb\|EAL30734.1\| GA21176 [Drosophila pseudoobscura pseudoobscura], gi\|125978397\|ref\|XP_001...	237.0	[0..1]	[201..1]
AGAP006809-PA - akirin: akirin\|protein_coding\|2L:38688410:38692401:-1\|gene:AGAP006809 gi\|58378673, gi\|... - gi\|58378673\|ref\|XP_308938.2\| ENSANGP00000013162 [Anopheles gambiae str. PEST], gi\|55246023\|gb\|EAA041...	230.0	[0..1]	[201..1]
gi\|45360463, gi\|... - gi\|89272789\|emb\|CAJ82302.1\| novel protein [Xenopus tropicalis], gi\|45360463\|ref\|NP_988914.1\| akirin ...	229.0	[0..1]	[201..1]
gi\|49118739, gi\|... - gi\|49118739\|gb\|AAH72831.1\| Akirin2 protein [Xenopus laevis], gi\|148228098\|ref\|NP_001085484.1\| akirin...	223.0	[0..1]	[201..1]
gi\|76625977 - gi\|76625977\|ref\|XP_871605.1\| PREDICTED: similar to CG8580-PA, isoform A isoform 1 [Bos taurus]	219.0	[0..1]	[198..1]
gi\|73973450 - gi\|73973450\|ref\|XP_853788.1\| PREDICTED: similar to CG8580-PA, isoform A isoform 3 [Canis familiaris]	216.0	[0..1]	[201..1]
ENSPTRT00000034029 - null AKIRIN2 - akirin 2 ENSMMUG000000028... - null, null	215.0	[0..1]	[201..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACATLKRAL DWESMNQRPP KRRRCNPFGQ AGSNAGPASP SRDGPSTSAG LPHTPSNRFA  60
   61 KDSTEPSPFS ESSLAKMSPD KMAESLCNEI KRLHKRKQLP ITSSALERMQ DSESSGSEMG 120
  121 PESPRRPDSP QNLMRHGEKA LFTFKQVQLI CESMIKEREN QLRERYESVL TTKLAEQYDA 180
  181 FVKFTYDQIQ RRYEAAPSYL S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits