YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0305562, FBp...
Organism:	Drosophila melanogaster
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0305562, FBp....

Description	E-value	Query Range	Subject Range
gi\|74006513 - gi\|74006513\|ref\|XP_537965.2\| PREDICTED: similar to ribosomal protein L18 [Canis familiaris]	298.0	[0..1]	[187..1]
gi\|70909737 - gi\|70909737\|emb\|CAJ17294.1\| ribosomal protein L18e [Hister sp. APV-2005]	295.0	[0..1]	[188..1]
gi\|28630354 - gi\|28630354\|gb\|AAN73381.1\| ribosomal protein L18 [Branchiostoma lanceolatum]	295.0	[0..1]	[188..1]
gi\|48098918 - gi\|48098918\|ref\|XP_392565.1\| PREDICTED: similar to Ribosomal protein L18 CG8615-PA [Apis mellifera]	292.0	[0..1]	[188..1]
gi\|114678150 - gi\|114678150\|ref\|XP_512797.2\| PREDICTED: similar to ribosomal protein L18 [Pan troglodytes]	292.0	[0..1]	[187..30]
gi\|91079322 - gi\|91079322\|ref\|XP_968042.1\| PREDICTED: similar to ribosomal protein L18e [Tribolium castaneum]	289.0	[0..1]	[188..1]
gi\|52354736, gi\|... - gi\|89269547\|emb\|CAJ82421.1\| ribosomal protein L18 [Xenopus tropicalis], gi\|58332366\|ref\|NP_001011030...	289.0	[0..1]	[187..1]
gi\|147907108, gi... - gi\|32450096\|gb\|AAH53777.1\| MGC64315 protein [Xenopus laevis], gi\|147907108\|ref\|NP_001082681.1\| major...	288.0	[0..1]	[187..1]
RL18_TIMBA - 60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1	288.0	[0..1]	[188..1]
RL18_BOVIN - 60S ribosomal protein L18 OS=Bos taurus GN=RPL18 PE=2 SV=3	286.0	[0..1]	[187..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDINHKYD RKVRRTEPKS QDVYLRLLVK LYRFLQRRTN KKFNRIILKR LFMSKINRPP  60
   61 LSLQRIARFF KAANQPESTI VVVGTVTDDA RLLVVPKLTV CALHVTQTAR ERILKAGGEV 120
  121 LTFDQLALRS PTGKNTLLLQ GR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1s1iO
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [143-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTARTACKHF GKAPGVPHSH TRPYVRSKGR KFERARGRRS SCGYKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits