YRC Public Data Repository - Protein Structure Prediction

Protein:	CG14823-PA
Organism:	Drosophila melanogaster
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG14823-PA.

Description	E-value	Query Range	Subject Range
CG14823-PB - This gene is referred to in FlyBase by the symbol Dmel\CG14823 (CG14823, FBgn0035734). It is a prote...	241.0	[0..1]	[114..1]
gi\|54642098, gi\|... - gi\|54642098\|gb\|EAL30847.1\| GA13274-PA [Drosophila pseudoobscura], gi\|125978623\|ref\|XP_001353344.1\| G...	208.0	[0..1]	[262..1]
gi\|116131741, gi... - gi\|119113335\|ref\|XP_309527.3\| AGAP011119-PA [Anopheles gambiae str. PEST], gi\|116131741\|gb\|EAA05103.... gi\|49089585 - gi\|49089585\|gb\|AAT51799.1\| lysozyme i-1 [Anopheles gambiae]	189.0	[0..109]	[262..11]
gi\|23263574 - gi\|23263574\|gb\|AAN16207.1\| lysozyme [Mytilus edulis]	184.0	[0..127]	[259..53]
gi\|23263580 - gi\|23263580\|gb\|AAN16210.1\| lysozyme [Mytilus galloprovincialis]	184.0	[0..128]	[259..54]
gi\|39595035, gi\|... - gi\|39595035\|emb\|CAE70903.1\| Hypothetical protein CBG17700 [Caenorhabditis briggsae], gi\|187025588\|em... gi\|157758113 - gi\|157758113\|ref\|XP_001671400.1\| Hypothetical protein CBG17700 [Caenorhabditis briggsae AF16]	183.0	[0..109]	[252..84]
ilys-4 - status:Confirmed UniProt:Q9GYQ2 protein_id:AAF99902.2	182.0	[0..108]	[252..2]
gi\|23263578 - gi\|23263578\|gb\|AAN16209.1\| lysozyme [Bathymodiolus thermophilus]	179.0	[0..128]	[258..42]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPTCSSSVA ELAKYSEDDV ETDESKVVEH QEYAEALSMS GESRKRKRWT RRSCCTRQVL  60
   61 STGAIFIALL LIIGAIYMHL RQKHHLGRLH INLKDRGQVE VLEEDFPMVT AAGVDAQTST 120
  121 ITTFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.979
Match:	1p85B
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [126-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPTSSPEPS AKCLDCMATT ATDNIPAICR HRGRPEEPCG IYRISHVYWQ DALRIIDPDD  60
   61 SLARDYGRCV VDVQCAERIV RSYVQRYGGE DCNGDGRIEC RDHVRLHMRG PGGCRRQEPL 120
  121 GSLSERRLEN CLKYRGIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.39794
Match:	2dqaA
Description:	No description for 2dqaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits