YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7295303, gi\|2...
Organism:	Drosophila melanogaster
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7295303, gi|2....

Description	E-value	Query Range	Subject Range
gi\|45361317, gi\|... - gi\|45361317\|ref\|NP_989236.1\| collagen, type XVIII, alpha 1 [Xenopus (Silurana) tropicalis], gi\|39645...	221.0	[0..1]	[211..1]
gi\|109509319 - gi\|109509319\|ref\|XP_241632.4\| PREDICTED: similar to Collagen alpha-1(XVIII) chain precursor [Rattus ...	221.0	[0..1]	[209..64]
gi\|40231528 - gi\|40231528\|gb\|AAR83298.1\| type XVIII collagen short variant [Homo sapiens]	221.0	[0..2]	[209..15]
COIA1_MOUSE, CA1... - Collagen alpha-1(XVIII) chain precursor [Contains: Endostatin] - Mus musculus (Mouse), (P39061) Coll...	216.0	[0..4]	[209..470]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICTLLVPVL GSFELVGQSI KDALAEYTLT DIMNNNQFAG IEFGEAEDGF PAFRFLQTAD  60
   61 VKSPYRMLLP EKLYEFAILI TFRQSSLKGG YLFSVVNPLD TVVQLGVHLS PVVKNSYNVS 120
  121 LVYTQADQNI GRKLASFGVA HVPDKWNSIA LQVLSDKVSF YYDCELRNTT LVTREPIELV 180
  181 FDSASTLYIG QAGSIIGGKF EVSSGGGQFD YAFDLQSIVG E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.045757
Match:	2uurA
Description:	No description for 2uurA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits