YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr65Az-PA
Organism:	Drosophila melanogaster
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr65Az-PA.

Description	E-value	Query Range	Subject Range
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	132.0	[0..113]	[215..78]
gi\|195151217, gi... - gi\|195151217\|ref\|XP_002016544.1\| GL11640 [Drosophila persimilis], gi\|194110391\|gb\|EDW32434.1\| GL1164... gi\|125808748, gi... - gi\|54636030\|gb\|EAL25433.1\| GA21130 [Drosophila pseudoobscura pseudoobscura], gi\|125808748\|ref\|XP_001... gi\|54636030\|gb\|E... - GA21130-PA [Drosophila pseudoobscura], GA21130 [Drosophila pseudoobscura pseudoobscura]	115.0	[0..94]	[211..33]
gi\|195582737, gi... - gi\|195582737\|ref\|XP_002081182.1\| GD10883 [Drosophila simulans], gi\|194193191\|gb\|EDX06767.1\| GD10883 ... gi\|194125522, gi... - gi\|195333756\|ref\|XP_002033552.1\| GM21386 [Drosophila sechellia], gi\|194125522\|gb\|EDW47565.1\| GM21386... Cpr49Ah-PA - The gene Cuticular protein 49Ah is referred to in FlyBase by the symbol Dmel\Cpr49Ah (CG8515, FBgn00...	111.0	[0..94]	[211..31]
AGAP009875-PA - CPR77: cuticular protein RR-1 family (CPR77)\|protein_coding\|3R:44651286:44651883:-1\|gene:AGAP009875 gi\|158298840, gi... - gi\|58391952\|ref\|XP_318995.2\| ENSANGP00000014836 [Anopheles gambiae str. PEST], gi\|55236096\|gb\|EAA144...	110.0	[0..111]	[210..19]
gi\|108881216, gi... - gi\|157135294\|ref\|XP_001656587.1\| pupal cuticle protein 78E, putative [Aedes aegypti], gi\|108881216\|g...	105.0	[0..109]	[214..19]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLTTLFSLI CIAIGYVRSQ PAGYPSARPP ATYLPVKPPA PPPRPPPPAP ANSYGPPKKG  60
   61 NGKPPPAPPK PSYGPPPKNG NGKPPPSNAY LPPGNGNGGS SGGGGAGGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [110-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGEDIPIIKL ESKVNTDGSY MYEYETGNGI KAEEMGYLKN AGVEGAEAQT AEGSFSYTSP  60
   61 EGQEISLTYI ADENGFQPQG DHLPTPPPIP IEIQEALDKL AAGGGCHGCD DNETGGNDDG 120
  121 GGGGYVYRRK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.29243
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits