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View Structure Prediction Details

Protein: Lcp65Aa-PA
Organism: Drosophila melanogaster
Length: 102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lcp65Aa-PA.

Description E-value Query
Range
Subject
Range
Lcp65Ac-PA - The gene Lcp65Ac is referred to in FlyBase by the symbol Dmel\Lcp65Ac (CG6956, FBgn0020642). It is a...
gi|220957526 - gi|220957526|gb|ACL91306.1| Lcp65Ac-PA [synthetic construct]
134.0 [0..1] [102..1]
gi|119114025, gi... - gi|119114025|ref|XP_318996.3| ENSANGP00000014758 [Anopheles gambiae str. PEST], gi|116118218|gb|EAA1...
129.0 [0..7] [100..10]
gi|54640814, gi|... - gi|54640814|gb|EAL29565.1| GA20238 [Drosophila pseudoobscura pseudoobscura], gi|125979595|ref|XP_001...
gi|54640814|gb|E... - GA20238-PA [Drosophila pseudoobscura], GA20238 [Drosophila pseudoobscura pseudoobscura]
127.0 [0..1] [102..1]
gi|108881215, gi... - gi|157135292|ref|XP_001656586.1| pupal cuticle protein 78E, putative [Aedes aegypti], gi|108881215|g...
127.0 [0..1] [99..1]
gi|91083447 - gi|91083447|ref|XP_970381.1| PREDICTED: similar to cuticle protein 1 [Tribolium castaneum]
126.0 [0..1] [101..1]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSILVLACL LSALCLAAAA PDAEIVDLVS DVNADSYSYK FETSDGTKQE QHGSLKSLGP  60
   61 EEDALQVAGS FSFVGDDGQT HAISYVADEN GFQPQGEDIP HL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 28.0
Match: PF00379.14
Description: No description for PF00379.14 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.928 N/A N/A d.17.2 Copper amine oxidase, domains 1 and 2
View Download 0.913 N/A N/A d.17.2 Copper amine oxidase, domains 1 and 2
View Download 0.901 N/A N/A d.17.2 Copper amine oxidase, domains 1 and 2
View Download 0.900 N/A N/A d.17.2 Copper amine oxidase, domains 1 and 2
View Download 0.878 N/A N/A b.4.1 HSP40/DnaJ peptide-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle