YRC Public Data Repository - Protein Structure Prediction

Protein:	Lcp65Ac-PA
Organism:	Drosophila melanogaster
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lcp65Ac-PA.

Description	E-value	Query Range	Subject Range
gi\|58388104, gi\|... - gi\|58388104\|ref\|XP_316041.2\| ENSANGP00000010802 [Anopheles gambiae str. PEST], gi\|55238807\|gb\|EAA117...	130.0	[0..1]	[104..32]
gi\|25012317 - gi\|25012317\|gb\|AAN71270.1\| LP05231p [Drosophila melanogaster]	129.0	[0..1]	[105..21]
gi\|108881215, gi... - gi\|157135292\|ref\|XP_001656586.1\| pupal cuticle protein 78E, putative [Aedes aegypti], gi\|108881215\|g...	129.0	[0..1]	[102..1]
gi\|91083447 - gi\|91083447\|ref\|XP_970381.1\| PREDICTED: similar to cuticle protein 1 [Tribolium castaneum]	128.0	[0..2]	[106..1]
gi\|125979601\|ref... - GA16877-PA [Drosophila pseudoobscura], GA16877 [Drosophila pseudoobscura pseudoobscura] gi\|54640818, gi\|... - gi\|54640818\|gb\|EAL29569.1\| GA16877 [Drosophila pseudoobscura pseudoobscura], gi\|125979601\|ref\|XP_001... gi\|195171311, gi... - gi\|195171311\|ref\|XP_002026450.1\| GL15515 [Drosophila persimilis], gi\|194111356\|gb\|EDW33399.1\| GL1551...	125.0	[0..3]	[103..7]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCTVAIVFT ALFAVVLAAP APDADTQILR LESDVQPEGY NFALETSDGK KHEEQGQLKN  60
   61 VGTEQEAIVV RGSYSFVADD GQTYTVNYIA DENGFQPEGA HLPNVPIGN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.958607
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.843	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits