YRC Public Data Repository - Protein Structure Prediction

Protein:	Lcp65Ad-PA, FBpp...
Organism:	Drosophila melanogaster
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lcp65Ad-PA, FBpp....

Description	E-value	Query Range	Subject Range
gi\|25012317 - gi\|25012317\|gb\|AAN71270.1\| LP05231p [Drosophila melanogaster]	143.0	[0..1]	[108..21]
gi\|58388104, gi\|... - gi\|58388104\|ref\|XP_316041.2\| ENSANGP00000010802 [Anopheles gambiae str. PEST], gi\|55238807\|gb\|EAA117...	141.0	[0..1]	[105..32]
gi\|108869994, gi... - gi\|157136320\|ref\|XP_001663702.1\| Pupal cuticle protein, putative [Aedes aegypti], gi\|108869994\|gb\|EA...	141.0	[0..1]	[105..1]
gi\|91083447 - gi\|91083447\|ref\|XP_970381.1\| PREDICTED: similar to cuticle protein 1 [Tribolium castaneum]	138.0	[0..1]	[107..1]
gi\|125979601\|ref... - GA16877-PA [Drosophila pseudoobscura], GA16877 [Drosophila pseudoobscura pseudoobscura] gi\|54640818, gi\|... - gi\|54640818\|gb\|EAL29569.1\| GA16877 [Drosophila pseudoobscura pseudoobscura], gi\|125979601\|ref\|XP_001... gi\|195171311, gi... - gi\|195171311\|ref\|XP_002026450.1\| GL15515 [Drosophila persimilis], gi\|194111356\|gb\|EDW33399.1\| GL1551...	136.0	[0..3]	[104..7]
gi\|194867483, gi... - gi\|194867483\|ref\|XP_001972081.1\| GG14081 [Drosophila erecta], gi\|190653864\|gb\|EDV51107.1\| GG14081 [D... gi\|83405605, gi\|... - gi\|83405605\|gb\|AAI10761.1\| MGC131064 protein [Xenopus laevis], gi\|148232321\|ref\|NP_001090156.1\| hypo...	134.0	[0..3]	[104..7]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFTIAIAFT CILACSLAAP PAIQQDAQVL RFDSDVLPEG YKFAVETSDG KSHQEEGQLK  60
   61 DVGTDHEAIV VRGSYAYVGD DGQTYSIQYL ADENGFQPEG AHLPRPVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.0
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.923	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.800	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.769	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.757	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.727	N/A	N/A	b.40.2	Bacterial enterotoxins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits