YRC Public Data Repository - Protein Structure Prediction

Protein:	Lcp65Ae-PA
Organism:	Drosophila melanogaster
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lcp65Ae-PA.

Description	E-value	Query Range	Subject Range
gi\|119114025, gi... - gi\|119114025\|ref\|XP_318996.3\| ENSANGP00000014758 [Anopheles gambiae str. PEST], gi\|116118218\|gb\|EAA1...	129.0	[0..9]	[96..16]
Lcp65Ac-PA - The gene Lcp65Ac is referred to in FlyBase by the symbol Dmel\Lcp65Ac (CG6956, FBgn0020642). It is a... gi\|220957526 - gi\|220957526\|gb\|ACL91306.1\| Lcp65Ac-PA [synthetic construct]	128.0	[0..1]	[96..1]
gi\|108881215, gi... - gi\|157135292\|ref\|XP_001656586.1\| pupal cuticle protein 78E, putative [Aedes aegypti], gi\|108881215\|g...	126.0	[0..1]	[95..1]
gi\|194867483, gi... - gi\|194867483\|ref\|XP_001972081.1\| GG14081 [Drosophila erecta], gi\|190653864\|gb\|EDV51107.1\| GG14081 [D... gi\|83405605, gi\|... - gi\|83405605\|gb\|AAI10761.1\| MGC131064 protein [Xenopus laevis], gi\|148232321\|ref\|NP_001090156.1\| hypo...	125.0	[0..4]	[97..14]
gi\|54640814, gi\|... - gi\|54640814\|gb\|EAL29565.1\| GA20238 [Drosophila pseudoobscura pseudoobscura], gi\|125979595\|ref\|XP_001... gi\|54640814\|gb\|E... - GA20238-PA [Drosophila pseudoobscura], GA20238 [Drosophila pseudoobscura pseudoobscura]	124.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLIVFVAI FAFALANEAQ IINLESDVGP ENFQWSFETS DGQAANAKGQ LKYPNTDHES  60
   61 LAVQGSFRFV ADDGQTYEVN YIADENGFQP QGAHLPVAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.69897
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.853	N/A	N/A	b.38.1	Sm-like ribonucleoproteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits