YRC Public Data Repository - Protein Structure Prediction

Protein:	CG10635-PA
Organism:	Drosophila melanogaster
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG10635-PA.

Description	E-value	Query Range	Subject Range
gi\|94420296 - gi\|94420296\|ref\|XP_001005759.1\| PREDICTED: similar to prefoldin subunit 4 [Mus musculus]	152.0	[0..15]	[138..45]
AGAP006946-PA - prefoldin subunit 4\|protein_coding\|2L:40198288:40198772:-1\|gene:AGAP006946 gi\|118778707, gi... - gi\|118778707\|ref\|XP_308810.3\| AGAP006946-PA [Anopheles gambiae str. PEST], gi\|116132513\|gb\|EAA04281....	150.0	[0..1]	[138..1]
gi\|145013752, gi... - gi\|39977691\|ref\|XP_370233.1\| hypothetical protein MGG_06730 [Magnaporthe grisea 70-15], gb\|EAA55073....	149.0	[0..1]	[135..1]
gi\|194108816, gi... - gi\|195169065\|ref\|XP_002025348.1\| GL12137 [Drosophila persimilis], gi\|194108816\|gb\|EDW30859.1\| GL1213... gi\|54640737, gi\|... - gi\|54640737\|gb\|EAL29488.1\| GA10456 [Drosophila pseudoobscura pseudoobscura], gi\|125979443\|ref\|XP_001... gi\|54640737\|gb\|E... - GA10456-PA [Drosophila pseudoobscura], GA10456 [Drosophila pseudoobscura pseudoobscura]	144.0	[0..1]	[138..1]
gi\|21430754 - gi\|21430754\|gb\|AAM51055.1\| SD11994p [Drosophila melanogaster]	142.0	[0..1]	[138..1]
gi\|34500102 - gi\|34500102\|gb\|AAQ73631.1\| Gim complex component GIM3-like protein [Epichloe festucae]	137.0	[0..1]	[135..5]
gi\|23482753 - gi\|23482753\|gb\|EAA18641.1\| hypothetical protein [Plasmodium yoelii yoelii] gi\|82705700 - gi\|82705700\|ref\|XP_727076.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	137.0	[0..20]	[134..58]
gi\|90302566, gi\|... - gi\|90302566\|gb\|EAS32197.1\| hypothetical protein CIMG_03221 [Coccidioides immitis RS], gi\|119186347\|r...	135.0	[0..6]	[135..27]
gi\|73992603 - gi\|73992603\|ref\|XP_534459.2\| PREDICTED: similar to prefoldin 4 [Canis familiaris]	135.0	[0..15]	[138..8]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKVASGTN KVFQNHDDVH ISFEDQQRIN RFAKHNARMD DFKAELETKR NELKSLEEAL  60
   61 EEIELFDEDE DIPFLVGEVF LSHKLEKTQD MLKETKEQVL KEIAGVEAKA KVIKAEMDEL 120
  121 KAHLYQRFGS NISLEAED

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.47
Match:	1fxkB
Description:	Prefoldin beta subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits