YRC Public Data Repository - Protein Structure Prediction

Protein:	membrin-PA
Organism:	Drosophila melanogaster
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for membrin-PA.

Description	E-value	Query Range	Subject Range
gi\|50760647 - gi\|50760647\|ref\|XP_418096.1\| PREDICTED: similar to Wnt-9b protein precursor (Wnt-15) (Wnt-14b) [Gall...	181.0	[0..1]	[214..491]
VTI13_ARATH - Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1	160.0	[0..1]	[213..1]
gi\|73999473 - gi\|73999473\|ref\|XP_544116.2\| PREDICTED: similar to vesicle transport through interaction with t-SNAR...	157.0	[0..2]	[213..180]
gi\|92883016 - gi\|92883016\|gb\|ABE86759.1\| Vesicle transport v-SNARE [Medicago truncatula]	156.0	[0..1]	[213..1]
GOSR2_RAT, GS27_RAT - (O35165) 27 kDa Golgi SNARE protein (Golgi SNAP receptor complex member 2) (Membrin), Golgi SNAP rec...	154.0	[0..1]	[214..1]
gi\|2316088 - gi\|2316088\|gb\|AAB82651.1\| golgi SNARE [Homo sapiens]	154.0	[0..1]	[214..1]
gi\|114666568 - gi\|114666568\|ref\|XP_001135292.1\| PREDICTED: golgi SNAP receptor complex member 2 isoform 5 [Pan trog...	152.0	[0..1]	[214..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLYHQTNN VVKDIERDFQ RLSQLSAQES LDVENGIQLK ITQANANCDR LDVLLYKVPP  60
   61 SQRQSSKLRV DQLKYDLRHL QTSLQTARER RQRRMQEISE REQLLNHRFT AN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [113-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAQPEETRLQ LDYELQHHTQ LGNAHRGVDD MIASGSGILE SLISQRMTLG GAHKRIQAIG  60
   61 STLGLSNHTM KLIERRLVED RRIFIGGVVV TLLIIALIIY FLVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.522879
Match:	2npsC
Description:	No description for 2npsC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits