YRC Public Data Repository - Protein Structure Prediction

Protein:	CG12027-PA
Organism:	Drosophila melanogaster
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG12027-PA.

Description	E-value	Query Range	Subject Range
gi\|68051491 - gi\|68051491\|gb\|AAY85009.1\| IP06415p [Drosophila melanogaster]	199.0	[0..1]	[147..13]
gi\|114683721 - gi\|114683721\|ref\|XP_001158570.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	141.0	[0..9]	[94..26]
gi\|51479141 - gi\|51479141\|ref\|NP_001003701.1\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 ...	140.0	[0..9]	[94..26]
ATP5J_BOVIN - ATP synthase-coupling factor 6, mitochondrial OS=Bos taurus GN=ATP5J PE=1 SV=2	138.0	[0..9]	[94..18]
gi\|157763988 - gi\|157763988\|ref\|XP_001674337.1\| Hypothetical protein CBG18931 [Caenorhabditis briggsae AF16] gi\|39594298, gi\|... - gi\|39594298\|emb\|CAE71876.1\| Hypothetical protein CBG18931 [Caenorhabditis briggsae], gi\|187024216\|em...	137.0	[0..14]	[136..9]
gi\|61372423, gi\|... - gi\|61372423\|gb\|AAX43841.1\| ATP synthase H+ transporting mitochondrial F0 complex subunit F6 [synthet...	136.0	[0..9]	[94..18]
ATP5J_MACFA - ATP synthase-coupling factor 6, mitochondrial OS=Macaca fascicularis GN=ATP5J PE=3 SV=1 gi\|109065657, gi... - gi\|109065665\|ref\|XP_001105349.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	135.0	[0..9]	[94..18]
ATP5J_RAT - ATP synthase-coupling factor 6, mitochondrial OS=Rattus norvegicus GN=Atp5j PE=1 SV=1	135.0	[0..9]	[94..18]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRFLKPSL VLCRSVSNTA SLRYKDPIYQ IFLDKVREYR LKSPKGKPVD PGPEFEAELK  60
   61 EVTERLALQY GGGEGVDMLE FPKFKLPDID IDPISVDDLP ENQPKPEKKN RDKEVKAKEK 120
  121 GGEKEVKAKD GKKADEPKGK DEKDKIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	2clyC
Description:	No description for 2clyC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits