YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr64Ac-PA
Organism:	Drosophila melanogaster
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr64Ac-PA.

Description	E-value	Query Range	Subject Range
gi\|66771563 - gi\|66771563\|gb\|AAY55093.1\| IP07124p [Drosophila melanogaster]	125.0	[0..1]	[188..15]
gi\|112983758, gi... - gi\|12862591\|dbj\|BAB32481.1\| cuticle protein [Bombyx mori], gi\|112983758\|ref\|NP_001036866.1\| cuticle ...	119.0	[0..2]	[171..1]
gi\|66564779 - gi\|66564779\|ref\|XP_624729.1\| PREDICTED: similar to CG1259-PB [Apis mellifera]	115.0	[0..48]	[187..180]
gi\|58378630, gi\|... - gi\|58378630\|ref\|XP_308909.2\| cuticular protein 55, RR-2 family (AGAP006837-PA) [Anopheles gambiae st... AGAP006837-PA - CPR55: cuticular protein RR-1 family (CPR55)\|protein_coding\|2L:39151550:39152078:1\|gene:AGAP006837	113.0	[0..74]	[183..39]
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	111.0	[0..76]	[163..78]
gi\|125776262, gi... - gi\|54638964\|gb\|EAL28366.1\| GA12160-PA [Drosophila pseudoobscura], gi\|125776262\|ref\|XP_001359221.1\| G...	106.0	[0..2]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAQTLFVLG LILSAVVAIP IDPYGLSAPG LTYAAPKLLA APAISYAAPK LLAAPAISYA  60
   61 APAISYAPKV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [71-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAAPVAVAKV AVAEPYDPNP QYSFSYGVTD HHTGDSKQQE ETLVNGVVHG SYSLAEPDGT  60
   61 IRKVTYTADK VNGFNAVVEK KGVAAVAIAK PALAVAAVPA ITKIGYASAP GLSLGGYH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.39794
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits