YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr64Aa-PA
Organism:	Drosophila melanogaster
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr64Aa-PA.

Description	E-value	Query Range	Subject Range
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	178.0	[0..19]	[191..1676]
gi\|46228363 - gi\|46228363\|gb\|EAK89262.1\| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ... gi\|66359288 - gi\|66359288\|ref\|XP_626822.1\| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...	178.0	[0..19]	[191..1683]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	162.0	[0..14]	[191..1502]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	144.0	[0..15]	[191..1516]
gi\|7494259 - pir\|\|T18492 hypothetical protein C0805w - malaria parasite (Plasmodium falciparum) gi\|124505021, gi... - gi\|3758846\|emb\|CAB11131.1\| DNA-directed RNA polymerase II, putative [Plasmodium falciparum 3D7], gi\|...	134.0	[0..29]	[191..2246]
gi\|71019559, gi\|... - gi\|71019559\|ref\|XP_760010.1\| hypothetical protein UM03863.1 [Ustilago maydis 521], ref\|XP_401478.1\| ...	132.0	[0..14]	[191..1558]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	128.0	[0..59]	[191..1394]
gi\|76635636 - gi\|76635636\|ref\|XP_881215.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	128.0	[0..89]	[191..1693]
gi\|73955457 - gi\|73955457\|ref\|XP_858173.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	128.0	[0..89]	[191..1722]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKLILVLS ALVAVSSAVV VPGPGLALPA YPSYPALAKV AAPLVAKVAG PEPYDPNPQY  60
   61 TFSYDVHDGS TGDVKSQQET RSGDVVQGAY SLIEADGTRR IVEYTADPVH GFNAVVRRE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.026872
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAVVKAVAPV AKVLAPAPLL HASPLVAKVP AYGPALAPAY PALAHGYGPA LAPAYGPALP  60
   61 KLALPALSPL GYH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits