YRC Public Data Repository - Protein Structure Prediction

Protein:	Akh-PA
Organism:	Drosophila melanogaster
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Akh-PA.

Description	E-value	Query Range	Subject Range
gi\|54641782\|gb\|E... - GA11153-PA [Drosophila pseudoobscura], GA11153 [Drosophila pseudoobscura pseudoobscura] gi\|195172289, gi... - gi\|195172289\|ref\|XP_002026931.1\| GL12828 [Drosophila persimilis], gi\|194112699\|gb\|EDW34742.1\| GL1282... gi\|54641782, gi\|... - gi\|54641782\|gb\|EAL30532.1\| GA11153 [Drosophila pseudoobscura pseudoobscura], gi\|125977996\|ref\|XP_001...	107.0	[0..1]	[79..1]
HTF_BLADI - Hypertrehalosaemic prohormone OS=Blaberus discoidalis PE=1 SV=1	103.0	[0..1]	[76..1]
gi\|55140543 - gi\|55140543\|gb\|AAV41425.1\| adipokinetic hormone preproprotein [Periplaneta americana]	72.0	[0..1]	[75..1]
gi\|158299445, gi... - gi\|158299445\|ref\|XP_001689190.1\| AGAP008834-PB [Anopheles gambiae str. PEST], gi\|157013523\|gb\|EDO633... gi\|88595938 - gi\|88595938\|gb\|ABD43194.1\| adipokinetic hormone I preproprotein [Anopheles gambiae]	67.0	[0..7]	[78..9]
gi\|157131132, gi... - gi\|157131132\|ref\|XP_001655817.1\| hypothetical protein AaeL_AAEL011996 [Aedes aegypti], gi\|108871660\|...	64.0	[0..15]	[78..15]
gi\|81170844, gi\|... - gi\|91083865\|ref\|XP_974200.1\| PREDICTED: hypothetical protein [Tribolium castaneum], gi\|81170844\|gb\|A...	64.0	[0..6]	[76..3]
gi\|110763631 - gi\|110763631\|ref\|XP_394063.3\| PREDICTED: similar to DE-cadherin precursor (Protein shotgun) [Apis me...	54.0	[0..20]	[76..1519]
gi\|116117450, gi... - gi\|118791126\|ref\|XP_001238167.1\| adipokinetic hormone 1 (AGAP008834-PA) [Anopheles gambiae str. PEST...	54.0	[0..7]	[66..9]
gi\|56155394 - gi\|56155394\|gb\|AAV80404.1\| red pigment concentrating hormone precursor [Cherax quadricarinatus]	54.0	[0..19]	[79..18]

Back

Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPKSEVLIA AVLFMLLACV QCQLTFSPDW GKRSVGGAGP GTFFETQQGN CKTSNEMLLE  60
   61 IFRFVQSQAQ LFLDCKHRE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.720	a.60.12	DNA polymerase beta-like, second domain
View	Download	0.547	a.60.1	SAM/Pointed domain
View	Download	0.423	a.60.12	DNA polymerase beta-like, second domain
View	Download	0.388	a.157.1	Skp1 dimerisation domain-like
View	Download	0.311	a.60.1	SAM/Pointed domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits