YRC Public Data Repository - Protein Structure Prediction

Protein:	mge-PB
Organism:	Drosophila melanogaster
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mge-PB.

Description	E-value	Query Range	Subject Range
gi\|220954288, gi... - gi\|220954288\|gb\|ACL89687.1\| mge-PA [synthetic construct], gi\|220944488\|gb\|ACL84787.1\| mge-PA [synthe... mge-PA - The gene maggie is referred to in FlyBase by the symbol Dmel\mge (CG14981, FBgn0035473). It is a pro...	171.0	[0..7]	[122..33]
gi\|91090252 - gi\|91090252\|ref\|XP_969934.1\| PREDICTED: similar to maggie CG14981-PA [Tribolium castaneum]	139.0	[0..13]	[122..34]
gi\|42549474, gi\|... - gi\|46116546\|ref\|XP_384291.1\| hypothetical protein FG04115.1 [Gibberella zeae PH-1], gi\|42549474\|gb\|E...	138.0	[0..3]	[117..26]
gi\|41581261 - gi\|41581261\|emb\|CAE47910.1\| mitochondrial import receptor subunit tom22 homologue, putative [Aspergi...	135.0	[0..10]	[116..40]
gi\|54641166, gi\|... - gi\|54641166\|gb\|EAL29916.1\| GA13402 [Drosophila pseudoobscura pseudoobscura], gi\|125976774\|ref\|XP_001... gi\|54641166\|gb\|E... - GA13402-PA [Drosophila pseudoobscura], GA13402 [Drosophila pseudoobscura pseudoobscura]	133.0	[0..15]	[122..44]
TOM22_NEUCR, OM2... - Mitochondrial import receptor subunit tom-22 OS=Neurospora crassa GN=tom-22 PE=2 SV=1, (Q07335) Mito... TOM22_NEUCR - Mitochondrial import receptor subunit tom22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / C...	132.0	[0..10]	[112..31]
gi\|115618192 - gi\|115618192\|ref\|XP_797896.2\| PREDICTED: similar to GekBS036P, partial [Strongylocentrotus purpuratu...	129.0	[0..20]	[121..1]
gi\|21299185, gi\|... - gi\|31212799\|ref\|XP_315384.1\| ENSANGP00000021073 [Anopheles gambiae str. PEST], gi\|21299185\|gb\|EAA113...	127.0	[0..17]	[103..156]
CE14794 - status:Confirmed UniProt:O17287 protein_id:AAB71053.1	126.0	[0..14]	[115..4]
gi\|94400503 - gi\|94400503\|ref\|XP_920030.2\| PREDICTED: similar to TOM22 protein [Mus musculus]	125.0	[0..25]	[120..121]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDYNEGKTS NDPQRENYDD EPDETASERF WGLTEMFPEP VRNAVGAVSS ATVKSVKGFY  60
   61 SFSCNASWIF FTSAVILFAP VIFETERAQM EELHKSQQKQ VLLGPGSAMG PGGPSPSLPL 120
  121 IR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.570	c.57.1	Molybdenum cofactor biosynthesis proteins
View	Download	0.553	a.63.1	Apolipophorin-III
View	Download	0.498	a.29.2	Bromodomain
View	Download	0.461	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.422	a.24.10	Histidine-containing phosphotransfer domain, HPT domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits