YRC Public Data Repository - Protein Structure Prediction

Protein:	RpL8-PA, RpL8-PB
Organism:	Drosophila melanogaster
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpL8-PA, RpL8-PB.

Description	E-value	Query Range	Subject Range
RL2_CARHZ - 50S ribosomal protein L2 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-29...	325.0	[0..6]	[256..37]
gi\|196196716, gi... - gi\|196253846\|ref\|ZP_03152451.1\| ribosomal protein L2 [Clostridium thermocellum DSM 4150], gi\|1961967... RL2_CLOTH - 50S ribosomal protein L2 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / N...	325.0	[0..6]	[256..37]
RL2_THEP3 - 50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE... gi\|242230648, gi... - gi\|242257804\|ref\|ZP_04802654.1\| ribosomal protein L2 [Thermoanaerobacter sp. X513], gi\|242230648\|gb\|... RL2_THEPX - 50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1 gi\|241904338, gi... - gi\|241904338\|ref\|ZP_04789040.1\| ribosomal protein L2 [Thermoanaerobacter brockii subsp. finnii Ako-1...	323.0	[0..4]	[256..35]
gi\|50730105 - gi\|50730105\|ref\|XP_416772.1\| PREDICTED: similar to 60S ribosomal protein L8 [Gallus gallus]	321.0	[0..1]	[255..78]
RL2_BACAC - 50S ribosomal protein L2 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplB PE=3 SV=1 gi\|228912852, gi... - gi\|228912852\|ref\|ZP_04076499.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar pulsiensis ... RL2_BACC3 - 50S ribosomal protein L2 OS=Bacillus cereus (strain 03BB102) GN=rplB PE=3 SV=1 gi\|228943919, gi... - gi\|228943919\|ref\|ZP_04106304.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar monterrey B... gi\|228776358, gi... - gi\|228983368\|ref\|ZP_04143581.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar tochigiensi... gi\|228834288, gi... - gi\|228925366\|ref\|ZP_04088462.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar pondicherie... RL2_BACHK - 50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian GN=rplB PE=3 SV=1 gi\|228828043, gi... - gi\|228931615\|ref\|ZP_04094521.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar andalousien... gi\|229136959, gi... - gi\|229136959\|ref\|ZP_04265586.1\| 50S ribosomal protein L2 [Bacillus cereus BDRD-ST26], gi\|228646497\|g... gi\|228629572, gi... - gi\|229153891\|ref\|ZP_04282021.1\| 50S ribosomal protein L2 [Bacillus cereus ATCC 4342], gi\|228629572\|g... gi\|228694083, gi... - gi\|229089244\|ref\|ZP_04220525.1\| 50S ribosomal protein L2 [Bacillus cereus Rock3-42], gi\|228694083\|gb... gi\|229119775, gi... - gi\|229119775\|ref\|ZP_04249036.1\| 50S ribosomal protein L2 [Bacillus cereus 95/8201], gi\|228663676\|gb\|... RL2_BACAA - 50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248) GN=rplB PE=3 SV=1 gi\|254720835 - gi\|254720835\|ref\|ZP_05182627.1\| 50S ribosomal protein L2 [Bacillus anthracis str. A1055] gi\|228600962, gi... - gi\|229182507\|ref\|ZP_04309758.1\| 50S ribosomal protein L2 [Bacillus cereus BGSC 6E1], gi\|228600962\|gb... gi\|229194503, gi... - gi\|229194503\|ref\|ZP_04321306.1\| 50S ribosomal protein L2 [Bacillus cereus m1293], gi\|228588969\|gb\|EE... gi\|254756768 - gi\|254756768\|ref\|ZP_05208797.1\| 50S ribosomal protein L2 [Bacillus anthracis str. Australia 94] gi\|254733586 - gi\|254733586\|ref\|ZP_05191306.1\| 50S ribosomal protein L2 [Bacillus anthracis str. Western North Amer... gi\|254751225 - gi\|254751225\|ref\|ZP_05203263.1\| 50S ribosomal protein L2 [Bacillus anthracis str. Vollum] RL2_BACHK - 50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rplB PE=3 SV=1 RL2_BACCZ - 50S ribosomal protein L2 OS=Bacillus cereus (strain ZK / E33L) GN=rplB PE=3 SV=1 gi\|47500517, gi\|... - gi\|47525369\|ref\|YP_016718.1\| 50S ribosomal protein L2 [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|49183147, gi\|... - gi\|49183147\|ref\|YP_026399.1\| 50S ribosomal protein L2 [Bacillus anthracis str. Sterne], gi\|49177074\|... gi\|30260304, gi\|... - gi\|30260304\|ref\|NP_842681.1\| 50S ribosomal protein L2 [Bacillus anthracis str. Ames], gi\|30253625\|gb... RL2_BACC1 - 50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rplB PE=3 SV=1 RL2_BACAH - 50S ribosomal protein L2 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplB PE=3 SV=1 RL2_BACC0 - 50S ribosomal protein L2 OS=Bacillus cereus (strain AH820) GN=rplB PE=3 SV=1 RL2_BACC7 - 50S ribosomal protein L2 OS=Bacillus cereus (strain AH187) GN=rplB PE=3 SV=1 RL2_BACAN - 50S ribosomal protein L2 OS=Bacillus anthracis GN=rplB PE=3 SV=1	319.0	[0..6]	[256..37]
RL2_BACHD - 50S ribosomal protein L2 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... RL2_BACHD - 50S ribosomal protein L2 OS=Bacillus halodurans GN=rplB PE=3 SV=1	319.0	[0..6]	[256..37]
RL2_CLOPE - 50S ribosomal protein L2 OS=Clostridium perfringens GN=rplB PE=3 SV=1 gi\|182626923, gi... - gi\|182626923\|ref\|ZP_02954656.1\| ribosomal protein L2 [Clostridium perfringens D str. JGS1721], gi\|17... RL2_CLOP1 - 50S ribosomal protein L2 OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB ... RL2_CLOPS - 50S ribosomal protein L2 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplB PE=3 SV=1 RL2_CLOPE - 50S ribosomal protein L2 OS=Clostridium perfringens (strain 13 / Type A) GN=rplB PE=3 SV=1 gi\|182381228, gi... - gi\|182381228\|gb\|EDT78707.1\| ribosomal protein L2 [Clostridium perfringens NCTC 8239], gi\|168216634\|r... gi\|170713394, gi... - gi\|170713394\|gb\|EDT25576.1\| ribosomal protein L2 [Clostridium perfringens CPE str. F4969], gi\|168215... gi\|168211902, gi... - gi\|170710158\|gb\|EDT22340.1\| ribosomal protein L2 [Clostridium perfringens B str. ATCC 3626], gi\|1682... gi\|170663230, gi... - gi\|170663230\|gb\|EDT15913.1\| ribosomal protein L2 [Clostridium perfringens E str. JGS1987], gi\|168205...	318.0	[0..4]	[255..35]
RL2_MOOTA - 50S ribosomal protein L2 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplB PE=3 SV=1	318.0	[0..6]	[255..37]
RL2_BACC4 - 50S ribosomal protein L2 OS=Bacillus cereus (strain B4264) GN=rplB PE=3 SV=1 gi\|206732771, gi... - gi\|206972197\|ref\|ZP_03233144.1\| 50S ribosomal protein L2 [Bacillus cereus AH1134], gi\|206732771\|gb\|E... gi\|228898866, gi... - gi\|228898866\|ref\|ZP_04063148.1\| 50S ribosomal protein L2 [Bacillus thuringiensis IBL 4222], gi\|22886... RL2_BACC2 - 50S ribosomal protein L2 OS=Bacillus cereus (strain G9842) GN=rplB PE=3 SV=1 gi\|228937416, gi... - gi\|228937416\|ref\|ZP_04100062.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar berliner AT... gi\|228809012, gi... - gi\|228950661\|ref\|ZP_04112795.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar kurstaki st... gi\|228853725, gi... - gi\|228905910\|ref\|ZP_04069807.1\| 50S ribosomal protein L2 [Bacillus thuringiensis IBL 200], gi\|228853... gi\|228919063, gi... - gi\|228919063\|ref\|ZP_04082442.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar huazhongens... gi\|228970302, gi... - gi\|228970302\|ref\|ZP_04130961.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar thuringiens... gi\|228782842, gi... - gi\|228976872\|ref\|ZP_04137284.1\| 50S ribosomal protein L2 [Bacillus thuringiensis Bt407], gi\|22878284... gi\|228803119, gi... - gi\|228956554\|ref\|ZP_04118350.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar pakistani s... gi\|228963213, gi... - gi\|228963213\|ref\|ZP_04124382.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar sotto str. ... gi\|228708944, gi... - gi\|229074174\|ref\|ZP_04207220.1\| 50S ribosomal protein L2 [Bacillus cereus Rock4-18], gi\|228708944\|gb... gi\|228705890, gi... - gi\|229077414\|ref\|ZP_04210066.1\| 50S ribosomal protein L2 [Bacillus cereus Rock4-2], gi\|228705890\|gb\|... gi\|229041018, gi... - gi\|229041018\|ref\|ZP_04189781.1\| 50S ribosomal protein L2 [Bacillus cereus AH676], gi\|228727315\|gb\|EE... gi\|229067878, gi... - gi\|229067878\|ref\|ZP_04201195.1\| 50S ribosomal protein L2 [Bacillus cereus F65185], gi\|228715237\|gb\|E... gi\|228675648, gi... - gi\|229107799\|ref\|ZP_04237435.1\| 50S ribosomal protein L2 [Bacillus cereus Rock1-15], gi\|228675648\|gb... gi\|229113789, gi... - gi\|229113789\|ref\|ZP_04243224.1\| 50S ribosomal protein L2 [Bacillus cereus Rock1-3], gi\|228669660\|gb\|... gi\|229094835, gi... - gi\|229094835\|ref\|ZP_04225840.1\| 50S ribosomal protein L2 [Bacillus cereus Rock3-29], gi\|228688578\|gb... gi\|229100912, gi... - gi\|229100912\|ref\|ZP_04231716.1\| 50S ribosomal protein L2 [Bacillus cereus Rock3-28], gi\|228682491\|gb... gi\|229148522, gi... - gi\|229148522\|ref\|ZP_04276778.1\| 50S ribosomal protein L2 [Bacillus cereus m1550], gi\|228634938\|gb\|EE... gi\|229170964, gi... - gi\|229170964\|ref\|ZP_04298565.1\| 50S ribosomal protein L2 [Bacillus cereus MM3], gi\|228612504\|gb\|EEK6... gi\|229125630, gi... - gi\|229125630\|ref\|ZP_04254662.1\| 50S ribosomal protein L2 [Bacillus cereus BDRD-Cer4], gi\|228657822\|g... gi\|228640540, gi... - gi\|229142919\|ref\|ZP_04271360.1\| 50S ribosomal protein L2 [Bacillus cereus BDRD-ST24], gi\|228640540\|g... RL2_BACCR - 50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NC... gi\|228606756, gi... - gi\|229176713\|ref\|ZP_04304117.1\| 50S ribosomal protein L2 [Bacillus cereus 172560W], gi\|228606756\|gb\|... gi\|229188398, gi... - gi\|229188398\|ref\|ZP_04315446.1\| 50S ribosomal protein L2 [Bacillus cereus ATCC 10876], gi\|228595072\|...	318.0	[0..6]	[256..37]
RL2_GEOSE - 50S ribosomal protein L2 OS=Geobacillus stearothermophilus GN=rplB PE=1 SV=2	317.0	[0..6]	[256..37]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVIRAQRK GAGSVFKAHV KKRKGAAKLR SLDFAERSGY IRGVVKDIIH DPGRGAPLAV  60
   61 VHFRDPYRYK IRKELFIAPE GMHTGQFVYC GRKATLQIGN VMPLSQMPEG TIICNLEEKT 120
  121 GDRGRLARTS GNYATVIAHN QDTKKTRVKL PSGAKKVVPS ANRAMVGIVA GGGRIDKPIL 180
  181 KAGRAYHKYK VKRNSWPKVR GVAMNPVEHP HGGGNHQHIG KASTVKRGTS AGRKVGLIAA 240
  241 RRTGRIRGGK GDSKDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.09691
Match:	1s1iB
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits