YRC Public Data Repository - Protein Structure Prediction

Protein:	n-syb-PG, n-syb-PE
Organism:	Drosophila melanogaster
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for n-syb-PG, n-syb-PE.

Description	E-value	Query Range	Subject Range
gi\|113547541, gi... - gi\|215697298\|dbj\|BAG91292.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115450939\|ref... gi\|125542540 - gi\|125542540\|gb\|EAY88679.1\| hypothetical protein OsI_10154 [Oryza sativa Indica Group]	165.0	[0..3]	[133..89]
gi\|222424315, gi... - gi\|79324082\|ref\|NP_001031469.1\| SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) [Arabidopsis thaliana], gi\|22...	159.0	[0..3]	[115..94]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKDKNKEQ ADAAPAGDAP PNAGAPAGEG GDGEIVGGPH NPQQIAAQKR LQQTQAQVDE  60
   61 VVDIMRTNVE KVLERDSKLS ELDDRADALQ QGASQFEQQA GKLKRKFWLQ NLKMMIIMGV 120
  121 IGLVVVGIIA NKLGLIGGEQ PPQYQYPPQY MQPPPPPPQQ PAGGQSSLVD AAGAGDGAGA 180
  181 GGSAGAGDHG GV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1sfcA
Description:	Synaptobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits