YRC Public Data Repository - Protein Structure Prediction

Protein:	n-syb-PF, n-syb-PA
Organism:	Drosophila melanogaster
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for n-syb-PF, n-syb-PA.

Description	E-value	Query Range	Subject Range
VA713_ARATH - Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1	145.0	[0..25]	[135..111]
gi\|113547541, gi... - gi\|215697298\|dbj\|BAG91292.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115450939\|ref... gi\|125542540 - gi\|125542540\|gb\|EAY88679.1\| hypothetical protein OsI_10154 [Oryza sativa Indica Group]	143.0	[0..18]	[127..113]
gi\|220949222 - gi\|220949222\|gb\|ACL87154.1\| CG1599-PA [synthetic construct] FBpp0308498, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG1599 (CG1599, FBgn0033452). It is a protein...	142.0	[0..26]	[136..110]
gi\|29840934 - gi\|29840934\|gb\|AAP05935.1\| SJCHGC01984 protein [Schistosoma japonicum]	140.0	[0..33]	[153..16]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADAAPAGDA PPNAGAPAGE GGDGEIVGGP HNPQQIAAQK RLQQTQAQVD EVVDIMRTNV  60
   61 EKVLERDSKL SELDDRADAL QQGASQFEQQ AGKLKRKFWL QNLKMMIIMG VIGLVVVGII 120
  121 ANKLGLIGGE QPPQYQYPPQ YMQPPPPPPQ QPAGGQSSLV DAAGAGDGAG AGGSAGAGDH 180
  181 GGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1sfcA
Description:	Synaptobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits