YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0304901, rob...
Organism:	Drosophila melanogaster
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0304901, rob....

Description	E-value	Query Range	Subject Range
gi\|56203991, gi\|... - gi\|56204931\|emb\|CAI23309.1\| dynein, light chain, roadblock-type 1 [Homo sapiens], gi\|56203991\|emb\|CA...	138.0	[0..9]	[103..56]
gi\|109129304 - gi\|109129304\|ref\|XP_001111256.1\| PREDICTED: similar to dynein, cytoplasmic, light polypeptide 2B iso...	132.0	[0..19]	[103..36]
gi\|50753873 - gi\|50753873\|ref\|XP_414162.1\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B; dynein, cyto...	131.0	[0..19]	[103..72]
gi\|57087115 - gi\|57087115\|ref\|XP_536771.1\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B [Canis famili... tr\|G1SVF4\|G1SVF4... - Uncharacterized protein OS=Oryctolagus cuniculus GN=DYNLRB2 PE=4 SV=2 DLRB2_BOVIN - Dynein light chain roadblock-type 2 OS=Bos taurus GN=DYNLRB2 PE=3 SV=1	124.0	[0..19]	[103..7]
gi\|157109684, gi... - gi\|157109684\|ref\|XP_001650782.1\| dynein light chain, putative [Aedes aegypti], gi\|108878966\|gb\|EAT43... gi\|167869847, gi... - gi\|170031427\|ref\|XP_001843587.1\| dynein light chain [Culex quinquefasciatus], gi\|167869847\|gb\|EDS332...	123.0	[0..14]	[103..3]
DLRB2_MOUSE - Dynein light chain roadblock-type 2 OS=Mus musculus GN=Dynlrb2 PE=1 SV=1 gi\|149038273, gi... - gi\|62665323\|ref\|XP_341695.2\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B [Rattus norve...	123.0	[0..19]	[103..7]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIYLKAME DVVQRNTDNT NRITEQAQGF VVSENAGDSL LHTSFDLTTA QSIVKHLHAS  60
   61 FLKLAQSCVR DLDTDDKLCF LRVKTRKHEF LVSPEEAFTV TVVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.30103
Match:	2hz5A
Description:	No description for 2hz5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits