YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9205-PA, CG9205-PB
Organism:	Drosophila melanogaster
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9205-PA, CG9205-PB.

Description	E-value	Query Range	Subject Range
gi\|25013036 - gi\|25013036\|gb\|AAN71607.1\| RH55218p [Drosophila melanogaster]	163.0	[0..1]	[224..62]
gi\|54640098\|gb\|E... - GA21611-PA [Drosophila pseudoobscura], GA21611 [Drosophila pseudoobscura pseudoobscura] gi\|126002092, gi... - gi\|54640098\|gb\|EAL29269.1\| GA21611 [Drosophila pseudoobscura pseudoobscura], gi\|126002092\|ref\|XP_001...	147.0	[0..1]	[218..1]
gi\|94406078 - gi\|94406078\|ref\|XP_988014.1\| PREDICTED: similar to Oxysterol-binding protein 1 [Mus musculus]	123.0	[0..17]	[215..223]
gi\|73982372 - gi\|73982372\|ref\|XP_540566.2\| PREDICTED: similar to Oxysterol-binding protein 1 [Canis familiaris]	123.0	[0..17]	[215..393]
gi\|114556550 - gi\|114556550\|ref\|XP_001143249.1\| PREDICTED: oxysterol-binding protein-like protein 9 isoform 22 [Pan... gi\|119627219, gi... - gi\|56203703\|emb\|CAI22217.1\| oxysterol binding protein-like 9 [Homo sapiens], gi\|55962539\|emb\|CAI1484...	122.0	[0..7]	[216..13]
gi\|109459924 - gi\|109459924\|ref\|XP_344996.3\| PREDICTED: similar to Oxysterol-binding protein 1 [Rattus norvegicus]	122.0	[0..17]	[215..89]
gi\|109106045 - gi\|109106045\|ref\|XP_001090190.1\| PREDICTED: oxysterol binding protein [Macaca mulatta]	121.0	[0..17]	[215..89]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNLNRIIR ESAKLKLCGQ LSKYTNVMKG WQYRWFTVDA KTGSLSYYLC DSSTVGDDIA  60
   61 PSPHVLASAP RGQVQLAGAV VYPSDEDSRT FAIACASGDT VKLRANDARA RQEWVDGLRA 120
  121 VVESHMKAMD ISNSSPLPPR EL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	2d9xA
Description:	No description for 2d9xA was found.

Predicted Domain #2

Region A:
Residues: [143-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAASDAMVSA RQALFLTEQC NASLARAIES IDCASFSPTD PDLLLLKAIS TASTQCLHQC  60
   61 LGLLQRHQEI NQPVAEAVPL VL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.808	a.50.1	Anaphylotoxins (complement system)
View	Download	0.772	a.64.1	Saposin
View	Download	0.707	a.23.5	Hemolysin expression modulating protein HHA
View	Download	0.698	a.64.1	Saposin
View	Download	0.617	a.50.1	Anaphylotoxins (complement system)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits