YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0305062, FBp...
Organism:	Drosophila melanogaster
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0305062, FBp....

Description	E-value	Query Range	Subject Range
gi\|17945237 - gi\|17945237\|gb\|AAL48676.1\| RE13914p [Drosophila melanogaster]	465.0	[0..1]	[279..1]
gi\|54641238, gi\|... - gi\|54641238\|gb\|EAL29988.1\| GA14888-PA [Drosophila pseudoobscura], gi\|125976916\|ref\|XP_001352491.1\| G...	289.0	[0..1]	[276..1]
gi\|118786839, gi... - gi\|118786839\|ref\|XP_315691.3\| AGAP005674-PA [Anopheles gambiae str. PEST], gi\|116126514\|gb\|EAA11318.... AGAP005674-PA - Miple\|protein_coding\|2L:18555848:18560275:-1\|gene:AGAP005674	163.0	[0..143]	[258..70]
gi\|22474517, gi\|... - gi\|22474517\|dbj\|BAC10621.1\| Pleiotrophin-like protein [Bombyx mori], gi\|18700463\|dbj\|BAB85199.1\| Ple...	163.0	[0..149]	[260..39]
gi\|108884502, gi... - gi\|157127087\|ref\|XP_001654797.1\| hypothetical protein AaeL_AAEL000288 [Aedes aegypti], gi\|108884502\|...	152.0	[0..143]	[268..72]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLILALTTA LHLVLVVLAH NPLSTRGESL SDGIRLVMEK RSGDVVHIRP ARGTLEAETV  60
   61 ASTTNSDTHR TRNNRKPNKP QEHSQQVGAH KSGSRKLVVA ENGGALSSQL PQPNHKQGHK 120
  121 NTDKQQRGGG SKQQRGHSQH HGGNRKGPKA ATPENGSTCR YAKSAWSNCD HKTNMRSRVL 180
  181 SLRKGEQNCL PTRTIQKKCK KGCRYEKGEW SQCVGGQITR EDKLEPEATG GSDQNCNPVR 240
  241 TVSKKCKANG NSSGGKQHGQ SRRTKEQKQK DKGASHISS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.3
Match:	1w0rA
Description:	Solution structure of dimeric form of properdin by X-ray solution scattering and analytical ultracentrifugation
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits