YRC Public Data Repository - Protein Structure Prediction

Protein:	CG3770-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3770-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|16648454 - gi\|16648454\|gb\|AAL25492.1\| SD01285p [Drosophila melanogaster]	268.0	[0..1]	[219..1]
gi\|114599512 - gi\|114599512\|ref\|XP_526884.2\| PREDICTED: lipoma HMGIC fusion partner-like 2 [Pan troglodytes] LHFPL2 - lipoma HMGIC fusion partner-like 2	253.0	[0..1]	[218..1]
gi\|109465907, gi... - gi\|157822913\|ref\|NP_001099872.1\| lipoma HMGIC fusion partner-like 2 [Rattus norvegicus], gi\|14905906...	245.0	[0..1]	[218..1]
gi\|109077716 - gi\|109077716\|ref\|XP_001108010.1\| PREDICTED: similar to lipoma HMGIC fusion partner-like 2 [Macaca mu...	243.0	[0..1]	[218..1]
LHPL2_DANRE - Lipoma HMGIC fusion partner-like 2 protein OS=Danio rerio GN=lhfpl2 PE=2 SV=1	241.0	[0..1]	[218..1]
AGAP009941-PA - \|protein_coding\|3R:45755902:45766669:1\|gene:AGAP009941 gi\|157014126, gi... - gi\|58392058\|ref\|XP_319072.2\| ENSANGP00000013360 [Anopheles gambiae str. PEST], gi\|55236159\|gb\|EAA140...	238.0	[0..1]	[218..1]
gi\|50755284 - gi\|50755284\|ref\|XP_414683.1\| PREDICTED: similar to HMGIC fusion partner-like 2 [Gallus gallus]	237.0	[0..1]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCYVIITIAS LVWFLCSLVA DMLFAVALVT PRWLVGPAQG TDSTASSHHQ SSVGIYTRCK  60
   61 VMQEGGFQCG RFDLDGLATD SSVYPNEWKA AMFFVMLGFS LLSVTVILTL ITCCRQSACG 120
  121 KSIHNMTACA QVVAGICMML GLFLHPMG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [149-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WRANRIQRLC GMDAEPFYPA DCSIGVSFYC GIIGVLLTFT AAGISLKAES SNMRTRVRRR  60
   61 VEAGSKLVCI P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits