YRC Public Data Repository - Protein Structure Prediction

Protein:	CG4692-PA, CG4692-PB
Organism:	Drosophila melanogaster
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4692-PA, CG4692-PB.

Description	E-value	Query Range	Subject Range
gi\|31196941, gi\|... - gi\|31196941\|ref\|XP_307418.1\| Anopheles gambiae str. PEST AGAP012515-PA [Anopheles gambiae str. PEST]... AGAP012515-PA - F-type H+-transporting ATPase subunit f\|protein_coding\|UNKN:10361647:10361970:-1\|gene:AGAP012515	160.0	[0..1]	[107..1]
gi\|108383142 - gi\|108383142\|gb\|ABF85708.1\| IP01747p [Drosophila melanogaster]	159.0	[0..1]	[104..2]
gi\|125811343, gi... - gi\|54637021\|gb\|EAL26424.1\| GA18359 [Drosophila pseudoobscura pseudoobscura], gi\|125811343\|ref\|XP_001... gi\|125811343\|ref... - GA18359-PA [Drosophila pseudoobscura], GA18359 [Drosophila pseudoobscura pseudoobscura]	154.0	[0..1]	[107..1]
gi\|94468562 - gi\|94468562\|gb\|ABF18130.1\| mitochondrial ATP synthase F chain [Aedes aegypti]	148.0	[0..1]	[107..1]
gi\|91088867 - gi\|91088867\|ref\|XP_972139.1\| PREDICTED: similar to CG4692 CG4692-PB [Tribolium castaneum]	145.0	[0..1]	[107..1]
gi\|109496584 - gi\|109496584\|ref\|XP_001071017.1\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial ...	141.0	[0..28]	[107..130]
gi\|76654247 - gi\|76654247\|ref\|XP_582944.2\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 c...	140.0	[0..28]	[107..140]
gi\|39589215, gi\|... - gi\|39589215\|emb\|CAE57948.1\| Hypothetical protein CBG01005 [Caenorhabditis briggsae], gi\|187038609\|em... gi\|157748861 - gi\|157748861\|ref\|XP_001678144.1\| Hypothetical protein CBG01005 [Caenorhabditis briggsae AF16]	140.0	[0..3]	[107..46]
CE03574 - ATP synthase complex f subunit like protein status:Confirmed UniProt:Q22021 protein_id:CAA91350.1	136.0	[0..3]	[107..46]
gi\|109065992 - gi\|109065992\|ref\|XP_001095115.1\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial ...	136.0	[0..28]	[107..15]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFGDYPAEY NPKVHGPYDP ARFYGKADVP FGQVKLGEIG AWLGRRNKTP NAVAGAVSRA  60
   61 WWRWQHKYVF PKRAGIAPFF QLTVASMTFF YLINYTKLKH HRNYKYH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.627	a.60.2	RuvA domain 2-like
View	Download	0.622	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.582	a.64.1	Saposin
View	Download	0.581	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.552	a.2.3	Chaperone J-domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits