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View Structure Prediction Details

Protein: betaTub60D-PA
Organism: Drosophila melanogaster
Length: 454 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for betaTub60D-PA.

Description E-value Query
Range
Subject
Range
gi|157767470 - gi|157767470|ref|XP_001667215.1| Hypothetical protein CBG16137 [Caenorhabditis briggsae AF16]
tbb-4 - tubulin beta chain status:Partially_confirmed UniProt:P41937 protein_id:CAA86310.1
gi|39596183, gi|... - gi|39596183|emb|CAE69820.1| Hypothetical protein CBG16137 [Caenorhabditis briggsae], gi|187026681|em...
600.0 [0..1] [450..1]

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Predicted Domain #1
Region A:
Residues: [1-454]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREIVNLQAG QCGNQIGAKF WEIISEEHGI DSNGIYVGDS DLQLERVSVY YNEASAVTRS  60
   61 SGGKYVPRAI LLDLEPGTME SVRSGPYGQL FRPDNFVYGQ SGAGNNWAKG HYTEGAELVD 120
  121 NVLDVVRKEC ENCDCLQGFQ LTHSLGGGTG SGMGTLLISK IREEYPDRIM NTYSVVPSPK 180
  181 VSDTVVEPYN ATLSIHQLVE NTDETYCIDN EALYDICFRT LKVSNPSYGD LNHLVSLTMS 240
  241 GVTTCLRFPG QLNADLRKLA VNMVPFPRLH FFMPGFAPLT SRGSQQYRAL TVPELTQQMF 300
  301 DAKNMMAACD PRHGRYLTVA AVFRGRMSMK EVDEQMLAVQ NKNSSYFVEW IPNNVKTAVC 360
  361 DIPPKGLKMS STFIGNTTAI QELFKRISEQ FSAMFRRKAF LHWYTGEGMD EMEFTEAESN 420
  421 MNDLVSEYQQ YQEATADDEF DPEVNQEEVE GDCI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 168.0
Match: 1ffxB
Description: Tubulin:stathmin-like domain complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle