YRC Public Data Repository - Protein Structure Prediction

Protein:	PebIII-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PebIII-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|194178846, gi... - gi\|77415650\|emb\|CAJ01494.1\| hypothetical protein [Drosophila yakuba], gi\|195489455\|ref\|XP_002092745....	190.0	[0..1]	[126..1]
gi\|157125794, gi... - gi\|157125794\|ref\|XP_001660785.1\| protein serine/threonine kinase, putative [Aedes aegypti], gi\|10888...	188.0	[0..1]	[126..1]
gi\|113951693, gi... - gi\|113951693\|ref\|NP_001039278.1\| chemosensory protein 10 [Tribolium castaneum], gi\|112031796\|gb\|ABH8...	178.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMILALVVL GLVLVAAEDK YTTKYDNIDV DEILKSDRLF GNYFKCLVDN GKCTPEGREL  60
   61 KKSLPDALKT ECSKCSEKQR QNTDKVIRYI IENKPEEWKQ LQAKYDPDEI YIKRYRATAE 120
  121 ASGIKV

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Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	1k19A
Description:	Chemosensory protein Csp2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits