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View Structure Prediction Details

Protein: or-PA
Organism: Drosophila melanogaster
Length: 191 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for or-PA.

Description E-value Query
Range
Subject
Range
gi|114601211 - gi|114601211|ref|XP_001148407.1| PREDICTED: similar to clathrin coat assembly protein-like isoform 2...
200.0 [0..1] [189..101]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKAILVFNN HGKPRLSKFY QYFDESLQQQ IIKETFQLVS KRDDNVCNFL EGGSLIGGSD  60
   61 YKLIYRHYAT LYFVFCVDSS ESELGILDLI QVFVETLDKC FENVCELDLI FHADAVHHIL 120
  121 SELVMGGMVL QTNMNDIMAR IEEQNKIVKQ EAGISAAPAR AVSAVKSMNI PQQIKDIKLP 180
  181 DLPQAIKDFK F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.39794
Match: 1w63Q
Description: AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle