| Protein: | gi|24762428, gi|... |
| Organism: | Drosophila melanogaster |
| Length: | 489 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24762428, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
217.0 | [0..1] | [488..191] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MAETFAEEKP KEKSKASRRK DKKDKTNQIV KIVMRHLPPT MTEAQFLDQV GPLPENDSYY 60
61 YCKADWSLGQ EATCRAYIDM SSKDIGEVVQ FRDRFDGYVF VDH
|
| Detection Method: |  |
| Confidence: | 19.522879 |
| Match: | 1uw4A |
| Description: | The structural basis of the interaction between nonsense mediated decay factors UPF2 and UPF3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.75748736237159 | bayes_pls_golite062009 |
| mRNA binding | 2.67679675039933 | bayes_pls_golite062009 |
| nucleic acid binding | 2.39584426231036 | bayes_pls_golite062009 |
| binding | 1.71154446874967 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.61170301639809 | bayes_pls_golite062009 |
| 0.24850555804347 | bayes_pls_golite062009 | |
| hydrolase activity | 0.0430264134452161 | bayes_pls_golite062009 |
|
Region A: Residues: [104-489] |
1 11 21 31 41 51
| | | | | |
1 KGVEYMAIVE YAPFQCFLKN KARNDDSKVN TIESEPHYQE FIKRLAQERE EASRMGDVKI 60
61 DFNFERRTEE KVKSTPLLQY LANKKEKRRE EARRRNEEKR KQREEQKLLR LAAQSDASKL 120
121 KEAEGGGGGG DTKKPAKKDV KDPQSSGSQA NDAKASRSKR RTERDQRRRE EHEQRKLVKR 180
181 DKKKDDGQGK QDKQDKQDKG KPSSGKQNKN SKSMDIVILK KANKPESNES LDVPSTSNAA 240
241 EASKEKPATE NTETPEAAVK VFTPAARGGR KEKRTGADKQ PAGSAHETAE EAIKAAQFRA 300
301 SEERRIRNKV GLTYYPPRHF TNPLDVYRID HRLPFTSPKP EFVHQMSCPK VQAAKMARME 360
361 RLPWWRRRLR RGTNAPIGAT NPNRRR
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
