| Protein: | Upf3-PB, FBpp0309967 |
| Organism: | Drosophila melanogaster |
| Length: | 492 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Upf3-PB, FBpp0309967.
| Description | E-value | Query Range |
Subject Range |
|
|
195.0 | [0..101] | [484..1847] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MAETFAEEKP KEKSKASRRK DKKDKTNQIV KIVMRHLPPT MTEAQFLDQV GPLPENDSYY 60
61 YCKADWSLGQ EATCRAYIDM SSKDIGEVVQ FRDRFDGYVF V
|
| Detection Method: |  |
| Confidence: | 28.0 |
| Match: | 1uw4A |
| Description: | The structural basis of the interaction between nonsense mediated decay factors UPF2 and UPF3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.75748736237159 | bayes_pls_golite062009 |
| mRNA binding | 2.67679675039933 | bayes_pls_golite062009 |
| nucleic acid binding | 2.39584426231036 | bayes_pls_golite062009 |
| binding | 1.71154446874967 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.61170301639809 | bayes_pls_golite062009 |
| 0.24850555804347 | bayes_pls_golite062009 | |
| hydrolase activity | 0.0430264134452161 | bayes_pls_golite062009 |
|
Region A: Residues: [102-492] |
1 11 21 31 41 51
| | | | | |
1 DHKGVEYMAI VEYAPFQCFL KNKARNDDSK VNTIESEPHY QEFIKRLAQE REEASRMGDV 60
61 KIDFNFERRT EEKVKSTPLL QYLANKKEKR REEARRRNEE KRKQREEQKL LRLAAQSDAS 120
121 KLKEAEGGGG GGDTKKPAKK DVKDPQSSGS QANDAKASRS KRRTERDQRR REEHEQRKLV 180
181 KRDKKKDDGQ GKQDKQDKQD KGKPSSGKQN KNSKSMDIVI LKKANKPESN ESLDVPSTSN 240
241 AAEASKEKPA TENTETPEAA VKVFTPAARG GRKEKRTGAD KQPAGSAHET AEEAIKAAQF 300
301 RASEERRIRN KDRPSIAIYQ PKARIRASDE LPQGAGGKDG SDGEASVVEE KTSKRNKRPN 360
361 RRNKPKPKEV KECELETRRF SKSSESSTSV K
|
| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
