YRC Public Data Repository - Protein Structure Prediction

Protein:	CG15800-PA
Organism:	Drosophila melanogaster
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG15800-PA.

Description	E-value	Query Range	Subject Range
gi\|73948993 - gi\|73948993\|ref\|XP_535176.2\| PREDICTED: similar to S-phase kinase-associated protein 1A isoform b [C...	220.0	[0..2]	[157..85]
gi\|157120870, gi... - gi\|157120870\|ref\|XP_001653701.1\| skp1 [Aedes aegypti], gi\|157120868\|ref\|XP_001653700.1\| skp1 [Aedes ... gi\|167870384, gi... - gi\|170048269\|ref\|XP_001851731.1\| S-phase kinase-associated protein 1A [Culex quinquefasciatus], gi\|1...	214.0	[0..2]	[157..4]
gi\|82407882, gi\|... - gi\|82407882\|pdb\|2AST\|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27 Peptide, g...	213.0	[0..2]	[157..3]
gi\|114601681, gi... - gi\|114601685\|ref\|XP_001166324.1\| PREDICTED: similar to OCP-II protein isoform 8 [Pan troglodytes], g...	213.0	[0..2]	[157..15]
AGAP008719-PA - S-phase kinase-associated protein 1\|protein_coding\|3R:16020685:16021173:1\|gene:AGAP008719 gi\|55239915, gi\|... - gi\|58386527\|ref\|XP_314827.2\| AGAP008719-PA [Anopheles gambiae str. PEST], gi\|55239915\|gb\|EAA10209.2\|...	211.0	[0..2]	[157..4]
gi\|74177667 - gi\|74177667\|dbj\|BAE38934.1\| unnamed protein product [Mus musculus]	211.0	[0..2]	[157..4]
gi\|29841010 - gi\|29841010\|gb\|AAP06023.1\| SJCHGC06138 protein [Schistosoma japonicum]	211.0	[0..2]	[157..4]
gi\|221221226, gi... - gi\|221221806\|gb\|ACM09564.1\| S-phase kinase-associated protein 1 [Salmo salar], gi\|221221226\|gb\|ACM09... gi\|225704136, gi... - gi\|225704136\|gb\|ACO07914.1\| S-phase kinase-associated protein 1A [Oncorhynchus mykiss], gi\|225703580... SKP1_RAT - S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3 gi\|229367476 - gi\|229367476\|gb\|ACQ58718.1\| S-phase kinase-associated protein 1 [Anoplopoma fimbria] SKP1_MOUSE - S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3	210.0	[0..2]	[157..4]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFETRDGR TISVNLALLE KSLVIREMCR VGQVPEDEDF VLPLHGIHSN VLLKILLWAE  60
   61 YHEKHEEPAW VDSKDPLPAE EIELQISDWD KEFLRVEIDS ICKIMEGCNY LDIPWLYKLC 120
  121 AQKLVFLSSR EPETQFSGYV EKIPRFQDHF IEQIQKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	2assA
Description:	Crystal structure of the Skp1-Skp2-Cks1 complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits