YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17662-PA
Organism:	Drosophila melanogaster
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17662-PA.

Description	E-value	Query Range	Subject Range
gi\|69111664 - gi\|69111664\|gb\|AAZ03394.1\| Aqp4-Luc fusion protein [Reporter vector pmuAqp4-Luc]	238.0	[0..26]	[266..12]
gi\|69111702 - gi\|69111702\|gb\|AAZ03395.1\| Aqp4-Luc fusion protein [Reporter vector praAqp4-Luc]	235.0	[0..26]	[266..12]
gi\|89212808 - gi\|89212808\|gb\|ABD63904.1\| aquaporin 1 [Gossypium hirsutum]	235.0	[0..2]	[251..24]
gi\|38198152, gi\|... - gi\|38198152\|emb\|CAE53882.1\| aquaporin [Ricinus communis], gi\|255571849\|ref\|XP_002526867.1\| Aquaporin...	235.0	[0..3]	[251..27]
gi\|77992951 - gi\|77992951\|gb\|ABB13429.1\| plasma membrane intrinsic protein [Olea europaea]	235.0	[0..2]	[251..25]
PIP14_ARATH - Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1	235.0	[0..2]	[251..25]
gi\|50345961 - gi\|50345961\|gb\|AAT74898.1\| plasma membrane intrinsic protein PIP1-1 [Fraxinus excelsior]	235.0	[0..2]	[251..25]
gi\|17940740 - gi\|17940740\|gb\|AAL49749.1\|AF452011_1 aquaporin-like protein [Petunia x hybrida]	233.0	[0..2]	[251..25]
gi\|3551131 - gi\|3551131\|dbj\|BAA32777.1\| plasma membrane aquaporin (PAQ1) [Raphanus sativus]	233.0	[0..2]	[251..24]

Back

Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQKQKSQE SNPNARWRLE GHQRSAIACF FGELAATAVF VFIACMGCVE TPLFQNSHFR  60
   61 SGLTFGLAIL IAIQCFGSVS GAHLNPAITL AAWLYGAIGW IRAIAYFVAQ AAGALIGYGL 120
  121 LVAVLPGNSI KGVDNPSGVC VTILAPGISV LQGVFIEFLI TCCLVMVACS VWDPRNAKLQ 180
  181 DSVPVRFGLT VSCLILTAVG ISGLFTGASM NPTRSLGPAV WNDSWAHHWI YWVGPLVAGA 240
  241 VTSLIYRMAF KGDEEIDLRT SDAKIRMIGE VIVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	2d57A
Description:	Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits