YRC Public Data Repository - Protein Structure Prediction

Protein:	l(2)06496-PA, FB...
Organism:	Drosophila melanogaster
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(2)06496-PA, FB....

Description	E-value	Query Range	Subject Range
gi\|27374266, gi\|... - gi\|27374266\|gb\|AAO01023.1\| l(2)06496-PA [Drosophila erecta], gi\|194884839\|ref\|XP_001976337.1\| lethal...	353.0	[0..1]	[192..1]
gi\|125807221\|ref... - GA22106-PA [Drosophila pseudoobscura], GA22106 [Drosophila pseudoobscura pseudoobscura] gi\|54635480, gi\|... - gi\|54635480\|gb\|EAL24883.1\| GA22106 [Drosophila pseudoobscura pseudoobscura], gi\|125807221\|ref\|XP_001...	312.0	[0..1]	[192..1]
AGAP002742-PA - dynactin 3\|protein_coding\|2R:26565910:26566491:1\|gene:AGAP002742 gi\|118782302, gi... - gi\|118782302\|ref\|XP_312178.3\| AGAP002742-PA [Anopheles gambiae str. PEST], gi\|116129504\|gb\|EAA07786....	293.0	[0..1]	[188..1]
gi\|108884727, gi... - gi\|157103257\|ref\|XP_001647895.1\| hypothetical protein AaeL_AAEL000050 [Aedes aegypti], gi\|108884727\|...	256.0	[0..1]	[188..1]
gi\|91081913 - gi\|91081913\|ref\|XP_970242.1\| PREDICTED: similar to lethal (2) 06496 CG9893-PA [Tribolium castaneum]	61.0	[0..1]	[171..1]
gi\|110759426 - gi\|110759426\|ref\|XP_001122103.1\| PREDICTED: similar to dynactin 3 [Apis mellifera]	56.0	[0..1]	[116..1]
gi\|115665249, gi... - gi\|115969335\|ref\|XP_001178562.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	50.0	[0..4]	[154..7]
gi\|147902248, gi... - gi\|46249620\|gb\|AAH68862.1\| MGC82243 protein [Xenopus laevis], gi\|147902248\|ref\|NP_001084646.1\| hypot...	48.0	[0..1]	[173..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALDILEKR IDALTRVLGP VQDSEVGEGV VDALCSAHAI LGEATTGSAA LQQCVKRSDE  60
   61 LEKYLDPNFL EEHQQVRSKE VYLQAVAPEL HTQAEQLERI KQLEPALGAE YFRSIPAECL 120
  121 EQLKGITQNN GEYAQQSELI EESLVLAMKR YGEIQAGLLS SLDAMSERLD QVEERMEQRK 180
  181 RAELSKDVPP KD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits