| Protein: | nahoda-PA, nahoda-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1335 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nahoda-PA, nahoda-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
1148.0 | [0..33] | [1334..1] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MSIQSTRHSP FAWTARALLL LATWCCYLGY LGSEAHVALT YPPARKFDLD FLDNARTKAP 60
61 CGMPKGSIRT SLLSGTQFNV TWHLAYAHKG GFRLQLLDAL DRPVLDLTPH VNNSEFVSTD 120
121 VTAQSYQVKI PND
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [134-255] |
1 11 21 31 41 51
| | | | | |
1 FECYNCTLRL LRQADEWTTS YRFWSCADVD IKLRKDFKET CSGNGKYFPS RCKCDKNFYG 60
61 PQCQYKDECS ADSDCGVQGK CVELGGTSLP KKQCYCNFGW FGIGCNKRSP YKSTSLDLSS 120
121 YS
|
| Detection Method: | |
| Confidence: | 6.39794 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [256-527] |
1 11 21 31 41 51
| | | | | |
1 KKELSPDYHV YWRLLEEQKE IEMVLKVNGT SWVGLGWRPR GMTPECKNFP LIRDIGDLTT 60
61 TLEASVPEPK SEPEPKSEPE PKSEPEPKSE PEPKSEPEPK SEPEPKSEPE PKSEPEPKSE 120
121 PEPKSEPEPK SEPEPKSEPE PKSEPEPKSE PEPKSEPEPK SEPEPKSEPQ PKQLAELRAA 180
181 PEPQSEPEPK SEPEPKSEPE PKSEPEPKSE PEPKSEPEPK SEPEPKSEPE PKSEPEPTSE 240
241 PEPKSAPEPK SEPEPTSEPE PTSKPEPTSE PE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [528-610] |
1 11 21 31 41 51
| | | | | |
1 PKSEPEPKSE PEAQSSKSKR VAGDFAKKGV SSVSTSVSYR VSTKSDRQRR EADSPKYRLN 60
61 PYTPRHDFNG MDCTDIVIGA ARG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [611-748] |
1 11 21 31 41 51
| | | | | |
1 MASRVGDYYS RDRSTPHTDE FFGGKSNLAL GTGFEENGVT TIIFRKKLVA NEPTDHTLDD 60
61 ALTHVIWAKG QEPEAYVHVP ASGLETQIAT VKNFYQQDEL KYHGHQMQRG VTQINFFEKE 120
121 KSATSTDRND LGTNVLDN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [749-926] |
1 11 21 31 41 51
| | | | | |
1 DCYGHWKYPS NCSPQEHTCE YYASWETVGK GDEMRWHIET SNTQTWTGIG FSDDQRMSQT 60
61 DAIIGWVDGR SGRPFLMDTW VLGYAPPKLD DRQDIYNASG RIEKGVTILE FNRKRVSNDE 120
121 QDLSFTDDHC LYLFFPVLGG AFNVVNKKIR KHEQVPPISS QRVCIKSCGK ELESVFVG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [927-1144] |
1 11 21 31 41 51
| | | | | |
1 TSTPAPSRLV YAVAVKLMNL GESYEAPKPG TVEFNNLAAT ISDSFNGILS PLTGYYKTEI 60
61 LGFEKEGSTM VAKVQAMFDK ADVEKKHALE TNEVDKTSEA AAQKNADVIR SALKDQVATG 120
121 RVGSLTVDPQ FLDFEALEYK SSSEPNAKET LLSFFDLSET RLYIVLGLIA ALVLIALIQA 180
181 FCTIWKTSRK SKNTKEKLIQ NSPWKEFASN TNYAFDPY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1145-1335] |
1 11 21 31 41 51
| | | | | |
1 GETEEKNITN SSSGKEKARN RHQSTTSSQQ TTLPMSHSPT SKSQMYYESP NGQGKSSNGN 60
61 GSRGNGRATQ ESSVGGAPYS RSSYAERAYS LPRQAHQYQQ SPASMQPSGY YTHDRRAARQ 120
121 GSRDRERERE REEERRQRQD RDRDSGYDRS RDDPRQNGGS DTPDFYFMPS QRKYSGEVVR 180
181 VYVDYNKDPK H
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
