YRC Public Data Repository - Protein Structure Prediction

Protein:	RpL23-PA
Organism:	Drosophila melanogaster
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpL23-PA.

Description	E-value	Query Range	Subject Range
RL23_MOUSE - 60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=1 SV=1 RL23_PIG - 60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=1 SV=1 gi\|149723894 - gi\|149723894\|ref\|XP_001501564.1\| PREDICTED: similar to HL23 ribosomal protein [Equus caballus] gi\|89268196, gi\|... - gi\|89268196\|emb\|CAJ82654.1\| ribosomal protein L23 [Xenopus tropicalis], gi\|58332166\|ref\|NP_001011231... gi\|164690981 - gi\|164690981\|dbj\|BAF98673.1\| ribosomal protein L23 [Solea senegalensis] gi\|187609309 - gi\|187609309\|pdb\|2ZKR\|KK Chain k, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... tr\|G1T6D1\|G1T6D1... - pep:known chromosome:oryCun2:19:40300584:40304272:-1 gene:ENSOCUG00000013915 transcript:ENSOCUT00000... gi\|363743475\|ref... - PREDICTED: 60S ribosomal protein L23 isoform 2 [Gallus gallus], PREDICTED: 60S ribosomal protein L23... ENSCJAT000000162... - null, null RL23_BOVIN - 60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2 RL23_RAT - 60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1 gi\|109114793 - gi\|109114793\|ref\|XP_001084985.1\| PREDICTED: similar to 60S ribosomal protein L23 isoform 2 [Macaca m... RL23_ICTPU - 60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2 gi\|206558008 - gi\|206558008\|gb\|ACI12870.1\| ribosomal protein L23 [Gillichthys mirabilis] tr\|G3H5W4\|G3H5W4... - 60S ribosomal protein L23 OS=Cricetulus griseus GN=I79_005709 PE=3 SV=1 gi\|114667757 - gi\|114667757\|ref\|XP_511444.2\| PREDICTED: similar to HL23 ribosomal protein isoform 6 [Pan troglodyte... gi\|124000075, gi... - gi\|124000075\|gb\|ABM87546.1\| ribosomal protein L23 [synthetic construct], gi\|123993085\|gb\|ABM84144.1\|... RPL23 - ribosomal protein L23 gi\|126308182 - gi\|126308182\|ref\|XP_001366590.1\| PREDICTED: similar to HL23 ribosomal protein [Monodelphis domestica... gi\|57688 - gi\|57688\|emb\|CAA41177.1\| ribosomal protein L23 [Rattus rattus] CCDS11330.1_1 - null tr\|M3WKT7\|M3WKT7... - Ribosomal protein L23 OS=Felis catus GN=RPL23 PE=3 SV=1	193.0	[0..1]	[140..1]
gi\|66558956 - gi\|66558956\|ref\|XP_392812.2\| PREDICTED: similar to Ribosomal protein L23 CG3661-PA [Apis mellifera] gi\|62083503 - gi\|62083503\|gb\|AAX62476.1\| ribosomal protein L23 [Lysiphlebus testaceipes] gi\|156545547 - gi\|156545547\|ref\|XP_001605069.1\| PREDICTED: similar to ribosomal protein L23 [Nasonia vitripennis] gi\|90819996 - gi\|90819996\|gb\|ABD98755.1\| putative ribosomal protein L17/23 [Graphocephala atropunctata]	193.0	[0..1]	[140..1]
gi\|91085777 - gi\|91085777\|ref\|XP_974360.1\| PREDICTED: similar to ribosomal protein L23e [Tribolium castaneum]	193.0	[0..1]	[140..1]
RL23_DANRE - 60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1 gi\|47216271 - gi\|47216271\|emb\|CAG05967.1\| unnamed protein product [Tetraodon nigroviridis] gi\|51038319 - gi\|51038319\|gb\|AAT94068.1\| ribosomal protein L23 [Sparus aurata]	193.0	[0..1]	[140..1]
gi\|1350673, gi\|1... - gi\|158330\|gb\|AAA28867.1\| ribosomal protein L17A [Drosophila melanogaster], sp\|P48159\|RL23_DROME 60S ...	192.0	[0..1]	[140..1]
gi\|70909731 - gi\|70909731\|emb\|CAJ17291.1\| ribosomal protein L23e [Sphaerius sp. APV-2005]	192.0	[0..1]	[140..1]
RL23_PONAB - 60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1 RL23_PONPY - 60S ribosomal protein L23 - Pongo pygmaeus (Orangutan)	192.0	[0..1]	[140..1]
gi\|15081322 - gi\|15081322\|gb\|AAK83857.1\|AF395586_1 ribosomal protein L17/23 [Spodoptera frugiperda] gi\|49532860 - gi\|49532860\|dbj\|BAD26665.1\| Ribosomal protein L17/23 [Plutella xylostella] gi\|54609237, gi\|... - gi\|54609237\|gb\|AAV34834.1\| ribosomal protein L23 [Bombyx mori], gi\|112984274\|ref\|NP_001037227.1\| rib... gi\|116788749 - gi\|116788749\|gb\|ABK24983.1\| unknown [Picea sitchensis]	192.0	[0..1]	[140..1]
gi\|32400871 - gi\|32400871\|gb\|AAP80667.1\|AF479048_1 ribosomal Pr 117 [Triticum aestivum]	192.0	[0..1]	[139..8]
RL23_BOVIN - 60S ribosomal protein L23 - Bos taurus (Bovine)	192.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRGRGGTA GGKFRISLGL PVGAVMNCAD NTGAKNLYVI AVHGIRGRLN RLPAAGVGDM  60
   61 FVATVKKGKP ELRKKVMPAV VIRQRKPFRR RDGVFIYFED NAGVIVNNKG EMKGSAITGP 120
  121 VAKECADLWP RIASNASSIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1s1iR
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits